Scaffold Ga0151669_109715

Overview

Basic Information

• Taxon OID: 3300011128
• Scaffold ID: Ga0151669_109715
• Source Dataset Name: Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2014_2, 0.02
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Toyama Prefectural University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2737
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium TMED56 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Environmental Dna From Seawater And Marine Sediment

Source Dataset Sampling Location

• Location Name: Japan Sea near Toyama Prefecture, JAPAN
• Coordinates
  • Lat. (^o): 37.04027
  • Long. (^o): 137.37583

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004220	Metagenome	448	Y
F026714	Metagenome	197	N
F056144	Metagenome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151669_1097154	F004220	GGA	MVEKDKLDWCYYFKSIDRWIRVCSKDMNEGFSVFTKQTRVKEHYKKIADSGVEFYTCDDDDLDKEYGMYYGNLEFDPLDIMESYSGHTKMFHKENGKWQQL*
Ga0151669_1097156	F026714	GGAGG	MASTYKKLIVYLNEEQEKVLTDFDLKIIDKNDFDLLHYTVGIISKRLAETNHKMITDVDPNTCDPSTLQYNSKTIG*
Ga0151669_1097158	F056144	GGAGG	MQRLIYRGYDIVEYDTQWKVELDNKSIATFDKVEGVSGEASCMCEIDRIKREERKEIDANIQRIDAQDKLNSDVQKARNNG