Scaffold Ga0151669_105037

Overview

Basic Information

• Taxon OID: 3300011128
• Scaffold ID: Ga0151669_105037
• Source Dataset Name: Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2014_2, 0.02
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Toyama Prefectural University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1497
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Environmental Dna From Seawater And Marine Sediment

Source Dataset Sampling Location

• Location Name: Japan Sea near Toyama Prefecture, JAPAN
• Coordinates
  • Lat. (^o): 37.04027
  • Long. (^o): 137.37583

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023485	Metagenome	210	N
F036434	Metagenome	170	N
F039388	Metagenome	164	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151669_1050371	F036434	N/A	KGVLMDTTKYKSVATKMETYNKAKIIASHSHRSIGAVISMLVDQEWQKQKPTIKKELKSAA*
Ga0151669_1050372	F039388	AGGAGG	MRSKFEKKYTDRDLDLIEKLKEKFSYTQIGTIFGRSKNSVLGAVYRRKLKRGHQVVKDAKPKRRRHEKIIKYYDTHQRSW*
Ga0151669_1050374	F023485	AGGA	MYTRLPESPVRKVYKCRHCGDVNVKFYNPKHDRAYTADEWEVIMTDGREALEKALRVVSQDPKMFA*