Scaffold Ga0151669_104308

Overview

Basic Information

• Taxon OID: 3300011128
• Scaffold ID: Ga0151669_104308
• Source Dataset Name: Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2014_2, 0.02
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Toyama Prefectural University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12795
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (88.46%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Environmental Dna From Seawater And Marine Sediment

Source Dataset Sampling Location

• Location Name: Japan Sea near Toyama Prefecture, JAPAN
• Coordinates
  • Lat. (^o): 37.04027
  • Long. (^o): 137.37583

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002430	Metagenome / Metatranscriptome	560	Y
F003073	Metagenome / Metatranscriptome	509	Y
F016757	Metagenome / Metatranscriptome	245	Y
F032478	Metagenome / Metatranscriptome	180	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151669_10430811	F002430	AGG	MTMITINLPKKQVNAILVALDAEIDNHIVMHKGNWESFPEVAALLMAYYTTRCKFEEENCYD*
Ga0151669_10430813	F003073	AGGAG	MGKKLENMTQDERIAYWAAQREKERIDRRNRIAKLSLDQRVAVINVYQMLDEMLDTALYPDMGGIKAVTAYNLQELADAKDRLRYEFNLDIREQG*
Ga0151669_1043082	F032478	GAGG	MYWEVGIKMDGISGVYDVHPQPLEQPIWNHAVEHALDMAQALYPDKHIELEFVKEFDGA*
Ga0151669_1043086	F016757	AGGAG	MPKYEVKVEATTQREIIVDAISEYEAWIKAQIEMVGLVGGENTQVISSKEIDDA*