Scaffold Ga0151669

Basic Information
Taxon OID	3300011128 Open in IMG/M
Scaffold ID	Ga0151669_104012 Open in IMG/M
Source Dataset Name	Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2014_2, 0.02
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Toyama Prefectural University
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300011128 Open in IMG/M

Scaffold ID

Ga0151669_104012 Open in IMG/M

Source Dataset Name

Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2014_2, 0.02

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Toyama Prefectural University

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5520
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (6.67%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

5520

Total Scaffold Genes

15 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

1 (6.67%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Environmental Dna From Seawater And Marine Sediment

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Environmental Dna From Seawater And Marine Sediment

Source Dataset Sampling Location
Location Name	Japan Sea near Toyama Prefecture, JAPAN
Coordinates	Lat. (^o)	37.04027	Long. (^o)	137.37583	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Japan Sea near Toyama Prefecture, JAPAN

Coordinates

Lat. (^o)

37.04027

Long. (^o)

137.37583

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004523	Metagenome	434	Y
F007611	Metagenome / Metatranscriptome	348	Y
F008022	Metagenome	340	Y
F011658	Metagenome / Metatranscriptome	288	Y
F014834	Metagenome / Metatranscriptome	259	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151669_10401210	F011658	N/A	MKTLYQQLKPEIKQSLKEQEEIYPALVKGIKCALQENYLWSHLSIGQARDLISFTSISLSSMSSYDWSFGEKFLVCED*
Ga0151669_1040124	F007611	N/A	MKNKKTITVLDYTTSRVYQYRVKINIHSEKFITFKGHSLSNVEWMEHQISNVITN*
Ga0151669_1040126	F014834	N/A	MKNTNEIEKQLKRKADAYIEQKANEMYAIHQEIADFVGGGTNFIDYITHFNQYNEARPEDKGNHTAYCDVHQTKKKYRIELELNYKKMLVAKYTKELITKLDMFE*
Ga0151669_1040127	F004523	N/A	MEYMSTEIRSAREAMTIFKILGIKEITTERQRKNGTQVFELPIQQMLQTLEPRPLRFATYKAGYVRNVSQYNLSPYQINKTIQHPPSKGRYYGRKERILIPSWEERLIYLAKFIIKNYYQKPTYSMNDYVIKCLKEAYLRDYNNRPSNRLPFGDIVHPDSSPADDIQVIINGHRYNLS*
Ga0151669_1040129	F008022	N/A	MTKSELEVKISTLQNLVTQKNEELTQYAAQIKTFDKELKDISKPKLTMAQVDELTELIEEGIEEFDFDDLDNYSIDYGIDYDNRVTCNSFCFDNVDELTRAICDKAFRMFADAKDEDTNEENQD*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0151669_104012

Overview

Ecosystem & Geography

Associated Families

Sequences