Scaffold Ga0151669_103678

Overview

Basic Information

• Taxon OID: 3300011128
• Scaffold ID: Ga0151669_103678
• Source Dataset Name: Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2014_2, 0.02
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Toyama Prefectural University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6668
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (78.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Candidatus Endolissoclinum → unclassified Candidatus Endolissoclinum → Candidatus Endolissoclinum sp. TMED37 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Environmental Dna From Seawater And Marine Sediment

Source Dataset Sampling Location

• Location Name: Japan Sea near Toyama Prefecture, JAPAN
• Coordinates
  • Lat. (^o): 37.04027
  • Long. (^o): 137.37583

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015680	Metagenome	253	Y
F016474	Metagenome	247	N
F034571	Metagenome	174	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151669_1036783	F015680	GGAG	MAMSSHDEYYKQLEGFKIKTFLGEDVDGFPEFILTKPKYEDVKISVSADPEGNYGGFLFIGGVK*
Ga0151669_1036785	F034571	AGGAG	MSREHFHESQIEDRITELMEEGMSDEDAIQKAQSEYDGQVNLVEDKALKIHERACMINKADIQRKLKQGCYPSEIVLSKVVDHLQANYNSSSQIRSTKFFCRDLLTEINDWTLEVANAE*
Ga0151669_1036789	F016474	AGGA	MKTETYLIKHEYDQDKKEMVSKPCKIEMRWKIYDSFACLEIVGFENKAETIKHLLYCHRDQTISILNSLNEQIDNADDLEPCKKDRFYFNESVGVNWGLHGQLDLEDLISEKEGS*