Scaffold Ga0151669_103367

Overview

Basic Information

• Taxon OID: 3300011128
• Scaffold ID: Ga0151669_103367
• Source Dataset Name: Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2014_2, 0.02
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Toyama Prefectural University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8361
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (94.44%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Environmental Dna From Seawater And Marine Sediment

Source Dataset Sampling Location

• Location Name: Japan Sea near Toyama Prefecture, JAPAN
• Coordinates
  • Lat. (^o): 37.04027
  • Long. (^o): 137.37583

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001655	Metagenome / Metatranscriptome	656	Y
F002858	Metagenome / Metatranscriptome	525	Y
F008883	Metagenome / Metatranscriptome	326	Y
F071124	Metagenome / Metatranscriptome	122	N
F073499	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151669_10336712	F008883	GGAGG	MNFGHYIIWYNHENHVWDIYDGRKGFKYPEYTVNNYSRLLCTLRDKLSRFDTDRNRGLFYRFTRFIRRFRHV*
Ga0151669_1033674	F073499	N/A	MMTDQELEQWLKDNPWKAYVVYPFGGILGALFVQYSCIQIIDSFLTGKII*
Ga0151669_1033675	F001655	GAGG	MKQPENSHTKHFGNDGPVGNDAEIIVYYEQHGPAEPVLRIPFWYYKEELGMFEHFEASVHRAAKALKESYTYWPEGYVHVQTLINDEYVNMI*
Ga0151669_1033676	F002858	AGGAG	MAIDEKSIYVVDGGDYSIYCLGYTQARAVTNDIMRLDPWGGIPFVLRKDLELSLDDRGNVVMSKSTLDKILFLASDELPESEGDA*
Ga0151669_1033678	F071124	AGG	MTYAEYEQGYYTGDSEDYSGPPEDPETRAMLEHLVEFETEMYRMKVKRRLSGCTYRQLRGLMVNIHGEDWKDAL*