Scaffold Ga0151669_100835

Overview

Basic Information

• Taxon OID: 3300011128
• Scaffold ID: Ga0151669_100835
• Source Dataset Name: Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2014_2, 0.02
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Toyama Prefectural University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30620
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 39 (90.70%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Environmental Dna From Seawater And Marine Sediment

Source Dataset Sampling Location

• Location Name: Japan Sea near Toyama Prefecture, JAPAN
• Coordinates
  • Lat. (^o): 37.04027
  • Long. (^o): 137.37583

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020385	Metagenome / Metatranscriptome	224	Y
F030154	Metagenome	186	Y
F048361	Metagenome / Metatranscriptome	148	N
F063160	Metagenome / Metatranscriptome	130	Y
F071405	Metagenome / Metatranscriptome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151669_10083511	F048361	GGA	VTRGEEECFVMGKNISASLLFALVLQAAMIVWSISQMRADVDANSSSIVRISGGVKAVDTSSFTQAVQLGKIEENIKGIKESLERMLVVMEKD*
Ga0151669_10083526	F071405	AGGA	MHPSYLGWQIDWPVFVKRPFTSDGKQWETQDHYNWLNRGIGSDAVASLYLQGFIHHNRELEKQAKVGDRLSELTGPQLDKLIGLLNAEVKANTNSNTEYNDKKVKQSKIDAKQRALLRSYLRNNRWIEDKFFEIRDGILED*
Ga0151669_10083540	F063160	GAGG	MNRYNVTMVDELGETFTVEIEICDLVENVTEYVRELYPESSIHYITPKGF*
Ga0151669_10083541	F020385	GGAG	MIKRPSFKEILAQRQEYLDALKSKGDMYALGFLESSFLYHMGDSGLEPLTTAQHSTLAKWKEAAQ*
Ga0151669_10083543	F030154	AGGA	MTYTIATRNTTAQQFVPVLGYILMPLKQAQELAKEYRAAGHDAVAFNTSVGV*