Scaffold Ga0151665_1028025

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0151665_1028025

Scaffold Ga0151665_1028025

Overview

Basic Information
Taxon OID	3300011127 Open in IMG/M
Scaffold ID	Ga0151665_1028025 Open in IMG/M
Source Dataset Name	Marine sediment microbial communities from Japan Sea near Toyama Prefecture, Japan - 2015_5, 0.02
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Toyama Prefectural University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	738
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Environmental Dna From Seawater And Marine Sediment

Source Dataset Sampling Location
Location Name	Japan Sea near Toyama Prefecture, JAPAN
Coordinates	Lat. (^o)	37.31041	Long. (^o)	137.23108	Alt. (m)		Depth (m)	11
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002430	Metagenome / Metatranscriptome	560	Y
F011124	Metagenome / Metatranscriptome	295	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151665_10280252	F002430	AGGAG	MITLNLPPKQVNAMLVAMDTEIEYVFETGVRPDWEAFPELAAMLMAYYTTRCKFEENQDA
Ga0151665_10280253	F011124	AGGAG	MKFDPDKTYVAVVWDMPVAVVDVEADDYVRNEDGSIKLFNMPNYDYSYICDDVDVNYLEERSE*

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