Scaffold Ga0150983_12448420

Overview

Basic Information

• Taxon OID: 3300011120
• Scaffold ID: Ga0150983_12448420
• Source Dataset Name: Combined assembly of Microbial Forest Soil metaT
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7683
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (69.57%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Source Dataset Sampling Location

• Location Name: Harvard Forest LTER, Petersham, MA, USA
• Coordinates
  • Lat. (^o): 42.532967
  • Long. (^o): -72.180244
  • Depth (m): 0 to .1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004601	Metagenome / Metatranscriptome	431	Y
F102999	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0150983_1244842011	F102999	GGA	LRSEIVFRSFRLLLVKVPAVVPVHDSVEVCVAPRTTLVGLKVHANPAGDTVEDSVTVPVKPLSGATLIVEVAVAPARIVAVVGLAVTV*
Ga0150983_1244842013	F004601	N/A	VHVSPAGDTVDVSATVPVKPLTGATVIVEVPVAPAMAVTLVGLAATVKSTPPVTVTVTVAE*
Ga0150983_1244842018	F004601	GAG	MLVGLKVQVNPAGETVDARATVPVKPFTGATVMVEVAVAPARALTLVGLAVTV*
Ga0150983_124484203	F102999	GAG	VPVTVTVYVPAEPEHDSVEVCAAPRTTLVGLRVHVRPAGDTVEARATVPVKPFNGVTVIVEVAAAPARALTAVGLAVTV*
Ga0150983_124484208	F004601	GGA	MLPGFRAQVRPAGETTEDRATVPVNAFTGATVIVDVAVAPARALTVVGLAVTVKSLTLIVTVAE*