Scaffold Ga0150983_11856802

Overview

Basic Information

• Taxon OID: 3300011120
• Scaffold ID: Ga0150983_11856802
• Source Dataset Name: Combined assembly of Microbial Forest Soil metaT
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 851
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Source Dataset Sampling Location

• Location Name: Harvard Forest LTER, Petersham, MA, USA
• Coordinates
  • Lat. (^o): 42.532967
  • Long. (^o): -72.180244
  • Depth (m): 0 to .1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006863	Metagenome / Metatranscriptome	363	Y
F033469	Metagenome / Metatranscriptome	177	Y
F035391	Metagenome / Metatranscriptome	172	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0150983_118568021	F033469	N/A	MDSKTRELLTLWRELSPQAKARMLEKARYVALAAGLEKTPEFEALFELPVADSDKNSRGLTVLEAR*
Ga0150983_118568022	F035391	GGAG	MGALPPHFFVWLLYMHMSGQATPIAGFKTEAMCVQIRDGMTAKANSTVNFKCDKFAIER*
Ga0150983_118568023	F006863	N/A	PSKSMGTPLRKPVASVAARHVDLMSKQQMIPGNRYLGWLCKNRACGVAIAIALPPAGGKVAVPEVDDQLTALKCPHCGDEDLYRWSARSEHEYTPKSVAI*