NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105246_11137490

Scaffold Ga0105246_11137490


Overview

Basic Information
Taxon OID3300011119 Open in IMG/M
Scaffold IDGa0105246_11137490 Open in IMG/M
Source Dataset NameMiscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)715
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameMichigan, USA
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001700Metagenome649Y
F008753Metagenome328Y

Sequences

Protein IDFamilyRBSSequence
Ga0105246_111374901F008753N/AMKTLARTNHNRTEEVITRAEEELVLAKLTRHGADRDLVQAQKTIEVLTSKLTTATENWNALWKSFRLVADLLRTPADDGQSWAQFIPQVLTRF*
Ga0105246_111374902F001700AGGAGVKRCAQLCTRNVLAQVRVLAPEVPLSKIAEEAKSQEYLDAVEKVEPEVEDLARRITDNLNIDISSLDDNASCN*

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