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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300011119 Open in IMG/M |
| Scaffold ID | Ga0105246_10024696 Open in IMG/M |
| Source Dataset Name | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3908 |
| Total Scaffold Genes | 5 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Michigan, USA | |||||||
| Coordinates | Lat. (o) | 42.3948 | Long. (o) | -85.3738 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F004566 | Metagenome / Metatranscriptome | 433 | Y |
| F030490 | Metagenome / Metatranscriptome | 185 | N |
| F033100 | Metagenome | 178 | Y |
| F075776 | Metagenome / Metatranscriptome | 118 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0105246_100246962 | F030490 | N/A | VGIFRRRTRLEDVLHDHLERLGVSSFWLRSALDAIHYCEQGDFFQPVFSVAGPAPARSVVALMRLEPFVRAEIDWTISPSESPFWVGSVGELQDELFDATASRFLDLYWSDRNPSVRPDLDEAFRDMVTFAQGEPPEATPAQDEDARHRRWALGSAGYVWRVAESTARTSDLDLRAALEKEVEAVVESFPRGEPEERFLAWAATECVNRNLLFGSASPGGWASGGEFLRRGFRFAERHVFSEDVTLPLKDQWYAFSFGVALYDVDAFLATRPPRRAGRADGRSRLNPQAAR* |
| Ga0105246_100246963 | F004566 | AGGAGG | MYARIATFESDPAKVDDAISMVRGEVESGDTPPGLEGAKMLMFVNRETGKGLGVTLFESEEAMRRGDEALNAMNPGGTERRTSVEFYEVPVQTVT* |
| Ga0105246_100246964 | F033100 | GAGG | MRANLPEKLGSRRGSVLGYLPGGALATLGRILPLAAGVSQGVRRLGLVGLAAAAAIALIVLVRWTPGDSEGWAGLAVLAILLAVPAAVLFAFSVFLGEIVELPDKLRNYPGLTREHAAELQAIAKDAKARERPAWRRLPGSTWRLATLVRSARELLAPHAPLLPLLNVPFLVATVVAALLVPLVALAALLVFLAAVA* |
| Ga0105246_100246965 | F075776 | GAG | LTRTALNVTIGTLMHGATHTEPEAAQAPVEVEADEPSLAWPEADPRWLLIPEPEDDSEAGRRDPAQAIEAYNRMLGERQRESATEVGARR* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |