Scaffold Ga0114922_10990188

Overview

Basic Information

• Taxon OID: 3300011118
• Scaffold ID: Ga0114922_10990188
• Source Dataset Name: Deep subsurface microbial communities from Aarhus Bay to uncover new lineages of life (NeLLi) - Aarhus_00045 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 683
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location

• Location Name: Aarhus Bay
• Coordinates
  • Lat. (^o): 56.103
  • Long. (^o): 10.458
  • Depth (m): 27

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002399	Metagenome / Metatranscriptome	563	Y
F059873	Metagenome	133	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114922_109901882	F002399	AGGAGG	MTIKTKSHRSIIGQIRKKYGLKDDIDPKKVKRIVTPEDWEIFITALTYPNGKPTQRGK*
Ga0114922_109901883	F059873	AGGGGG	MSIDYIGVKIKATTYGDFQDDVKEITHAEMQFSVPCDETKAKKFEKAKDNLLQAVINMYALEDQQQVDVTIEYEYFGV