Scaffold Ga0151516_11253

Overview

Basic Information

• Taxon OID: 3300011116
• Scaffold ID: Ga0151516_11253
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Nov
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 10542
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (68.42%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003332	Metagenome	493	Y
F013413	Metagenome	271	N
F014620	Metagenome	261	N
F024785	Metagenome	204	Y
F095479	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151516_1125313	F003332	AGG	MAGTAVVQSGDYELEIDTGFLQDAFTLDSATMGVLNNTQFVLDGTTNFASVLDGCGNVTIKRGRQDIGDQFSAGTMAFTMLDTTGVFNPFNEESPYWDATTEQPGLAPMRKVRFARYDTNDVKEYLFKGFIVNYDYNFALGGIDTVTVYCADDFYLLSQTYLDEFNVSEELSSTRVTAVLDLPEVNFPIAQRAISAGTQTLGGAAAFTVDNGTSVQAYLAQINQAEQGRLFMSRDGDLTFQPRIGNTLSASVADFHDDGTNIPYSGVGISFQADQVCNRASVTIRGSNNPQVADDAASQTVYFIQTQSITESLLHNDAAALSLANYLLEPEPIARYTSVETAFMSLTDPQRDQVAIIDIGQTITIEHTFTTGATTSELAQELAIEGVEHTISLSQGHSIALFTSPTVIVYELILDDPNLGVIAPSLNVLG*
Ga0151516_1125319	F095479	N/A	AVLQTLENASFEIGQTITVDDVGGDFDGEVVVYAVPQYYYIGTDGNGFPAFNPNIPINNQVMYVAVGDAVERTPATGTIEFDPVCEWIDDGDIADWLGIEVATAGDEAFLVICAAAANAFCSLRRFENGYFDQLSVAPSSAVKLGTTMYGGALYRQRGSAGQDFATFDGMGQGTTNGLSAIVKQLLGINRAVVA*
Ga0151516_112536	F014620	N/A	MFAPSIGLGGTYERPAINREVIIIAREAKQTSIDAALKAKPKTGKKRARVHAYLLGRPATDEEIETALNMSGNTVRPTRGTLVKDGHVIDSGVRRLTRAGNEAIVWRCV*
Ga0151516_112537	F013413	AGG	MTENEYDETFDMQMEREHQQVVARMQQFKLIGEQISKMPVTSTRTLEIEVRYLMGIISELETQVKNLESETRRLEMLVTRVNN*
Ga0151516_112539	F024785	N/A	MDLWLSRAVYHSDKSLWNNGSWVVRDVRGKPGIVSNHAKGVAVDLSYRWQSEKKRGRQDGRKTSLAYIIKLLENADTLGIQLVIDYALNRSWKCSRGTWIAGTFESGDWWHVEVDPVMCNSPELAKQAWDKVFGVIPAVVKNPV*