Scaffold Ga0151516_11212

Overview

Basic Information

• Taxon OID: 3300011116
• Scaffold ID: Ga0151516_11212
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Nov
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 10727
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (64.71%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000325	Metagenome / Metatranscriptome	1296	Y
F006543	Metagenome / Metatranscriptome	370	Y
F054798	Metagenome / Metatranscriptome	139	N
F060726	Metagenome / Metatranscriptome	132	Y
F074795	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151516_112121	F074795	AGGA	MTKEQAIVKILKVLNSRMAVMSKPMRDEALTVAEEYGITAKDLIEEWTRIAERI*
Ga0151516_1121211	F000325	GGAG	MKTADGNDKLGKGCIVVSRPVGDTCPPDCDYLNNGCYAEATENQYKNARVAGFANIITEKNKIRAMILEAKRRKKSIRWHERGDWFLNGELDVEYVANVTWACESILADGDTLPDMWFYTHIYDDRLVSLEKYMAVYASVHDDNDMGEALAQGFKLFAWCDSDEKIAPKRPRSKKKADAWRAALPKLVVLNGSKFVTCPEIRRGRATITCTGTKDSISCDMCVRGLANVLFPAH*
Ga0151516_1121232	F060726	AGG	MYRNVLLTDKEISLLKRVVGDTLHEKIVPEARNLTVILNRLRGIKPLIPNNQFLNYGK*
Ga0151516_112124	F054798	GAG	MIYLNLNEIERLCEIVAYLTKMKMGVVAELKGTKWHIEVTN*
Ga0151516_112128	F006543	N/A	MVETNTNLKGSDMKKFSFVVDVVADELDRDSVVDSIRSCLTDALPSDVHANVKAGEVKAFSEQGYKVWRARVTGVTAEQAGDAHNGKVEAEAEAVA*