Scaffold Ga0151516_11180

Overview

Basic Information

• Taxon OID: 3300011116
• Scaffold ID: Ga0151516_11180
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Nov
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 10926
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (21.05%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006345	Metagenome / Metatranscriptome	375	Y
F012014	Metagenome / Metatranscriptome	284	Y
F021096	Metagenome / Metatranscriptome	220	N
F060705	Metagenome / Metatranscriptome	132	N
F062696	Metagenome	130	N
F064517	Metagenome / Metatranscriptome	128	N
F098891	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151516_1118010	F098891	N/A	MSIAQTAILASALKGNSSSTPAVKPTSFTESIAQKPIQWLVVAGVVVYFGKKFLGGLVKTGEERRTETAETSTSTSNPFSFKSFLAQNIPTGTKLLTASGAYQNAKQIYDALNVYLSEDEDIAIGVFTSLPSKTQVAQVSQAFYNYYKKDILYYLKNGNKTIDFGTGGLSDSEYARVIDNVSRKPKF*
Ga0151516_1118012	F064517	AGCAG	MARTTTENIFYGKSQQIIADGCFAISFFRPSTSNPVNVAGIPLEAGQTLSIKQNVGDEDWSTYEIVFGTGASTNELYVTKIMPLTRG*
Ga0151516_1118015	F062696	N/A	MKNERYRIFYICIVGLCLTACSPSNRLSRLLKNNPYLYEIFTHDSIRVQTSVVSDSIFFFTKEKDTITFNNATIYRKSDTLRLVQHCPPCTTYITKQILQPTQKYIKEKGFKRSLREKLEDAIFPILIGLLLGFIITRKG*
Ga0151516_1118017	F006345	N/A	MKTENAIQILKEALHIAIAKGCYGLIETTNIVKAIEHLENQPDIQFGEITED*
Ga0151516_111805	F012014	N/A	MNLLSKEVLIGAAALGAGAVAAKVVQKKVLPMIKSDISPVVGNLSTLVLGILTPVAIKGSVGTGLGAGMVAVSVAGLVDPYLAKAGITGTDDTYLGDVLMGETGGDVLMGATAFEGATNDFTGAGAGEMDY*
Ga0151516_111808	F021096	GGAGG	VAAVVSPIINYFLTHNLCKDYTAIEGEMSTLVTLNFPNTGNYQNSYYFSSQTMLDGINATITAIEIVPSTELTKLPTGQTNVDSSILPNGVLYVSNLKRQIIATLPLYGLQRSANNGKPTFTYFNDQVWQNCYVEFTSSGFTTPVTPLTFRVYYVKKQKN*
Ga0151516_111809	F060705	N/A	MAISSLNFIISQFETEKYRYFAIYDEDGDRVYLQNDLIDVDTAINKLRNFFKDNQGYYTIYVMGKKLVNKQNLKSRDDSTIAKYNVEVSMPVLPQGVNGLTGMGGNSMLPPDDPRSNAPNMFQLLGQMSQVEQQMKLMEKDHQHYRREKELLDRIDKLEEEGNKSKGMGAIVDRLGEHLQDPNIILGLISGVSQLFKKESVVPMHGVKNNDMMMINDNDIMPMNGIDEQVINNISTRREKMVGAVNFLMQHDPNFPENITKLSELAKNKPAIYTMAVGYLNNL*