Scaffold Ga0151516_11009

Overview

Basic Information

• Taxon OID: 3300011116
• Scaffold ID: Ga0151516_11009
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Nov
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 12251
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (82.61%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002826	Metagenome / Metatranscriptome	527	Y
F003962	Metagenome / Metatranscriptome	459	Y
F019450	Metagenome / Metatranscriptome	229	Y
F036596	Metagenome / Metatranscriptome	169	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151516_1100912	F002826	N/A	MQVEAKNRLKWARDCLLNARNRLAVERDRATHGRSIDIIQIITLVDAASLVCKEVAGDE*
Ga0151516_1100916	F003962	AGAAGG	LNHDREQLKVAHKFIGLLQRENAQLHGVLRLLGQLVDDMNANCSYEVFEVQWNSLTEQVKRLSGFFENHQKALQSLQDSIPDVWDTDEVDDES*
Ga0151516_1100920	F019450	GGAG	MKTVYVVYNSVGQFQARFLTWRSALRWAIREGMEWTAIIRKEVQS*
Ga0151516_1100923	F036596	AGGA	MNKTKTWKIGEECVGGIIQAKISENVYFPASTAVKILIKDWKTKDILDSQVFGRIHESKLESFLHDMTTSYHASNVMEWVKENAWSHRVLVAFDGGDNWKTRVEPKTWSRS*