Scaffold Ga0151516_10975

Overview

Basic Information

• Taxon OID: 3300011116
• Scaffold ID: Ga0151516_10975
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Nov
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 12486
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (82.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002540	Metagenome / Metatranscriptome	550	Y
F003377	Metagenome / Metatranscriptome	490	Y
F015583	Metagenome / Metatranscriptome	253	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151516_1097510	F002540	AGGAGG	MPAYEATPAELEQYGANLNIWQQIALLQAWSPLIGYGQRLVNESDPYKKSLIVAEAAEWLASKTDAQADDQLVKLLGDIIRTPQGEAVVRWALLQVEAVR*
Ga0151516_1097516	F015583	AGGAGG	MLRCLLVLLAALACIHANADTTVVARRGSVISAQDHAVVIARRGSLVHSSCGQYEGIGTGSTPEQARRNCCFFGKRVIVEEGVAYSPVARRWFAVIRYR*
Ga0151516_109755	F003377	GGAG	MTDAAKDTMYGIIERWGFPTLVAIACGWVLRQDVLLPLVSEHRQTLQQICETQREIVASIREQTRLLYALQPQARETQEN*