Scaffold Ga0151516

Basic Information
Taxon OID	3300011116 Open in IMG/M
Scaffold ID	Ga0151516_10931 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Nov
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011116 Open in IMG/M

Scaffold ID

Ga0151516_10931 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Nov

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	12906
Total Scaffold Genes	21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (42.86%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

12906

Total Scaffold Genes

21 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (42.86%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.947421	Long. (^o)	127.818872	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.947421

Long. (^o)

127.818872

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F007260	Metagenome / Metatranscriptome	354	N
F010835	Metagenome / Metatranscriptome	298	N
F013412	Metagenome / Metatranscriptome	271	N
F013879	Metagenome / Metatranscriptome	267	N
F017997	Metagenome / Metatranscriptome	237	Y
F023575	Metagenome / Metatranscriptome	209	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151516_1093113	F023575	N/A	MAVSKGLALVYGAKGTIKLYTVNDAGALVALTTGTITTIESYDVTHEADVEQIKNSSGEVVAQVSANERVSLNVTFIPSADTFANAKIAASLPRVNGYAEIASSDGPSAGTGITVGGVSLDGTYVYSGGGSIKFTSSGKAMVTVTVTKYPSLAGNAAVFTL*
Ga0151516_1093114	F010835	AGGA	MNAVALRTERALVDWLAAQDWSASPLGTPTCLTSYGHGAFADPDLEDQMPDFPRIVVRSSTAVPVHPIDRTCEVDVTATLQLSADDTAEYNVLATVAAFEDILQPLFVDDNISELNVEESNPSGGFVAYFATPTDFGMNDTSERARTFSRSMRIFAAANAITT*
Ga0151516_1093115	F013879	GGAG	MTPTVTVDTSRFDAAWKEYIPKTRRSLADAVNSRTFFLMLRLYCLLPPKSPQAARNKILDYFNRPVGARKIDKKTGKFLGRSRELRLVHLIAQSKNFKAGNEGLYGPTMRTAAAKLRRRAAGSVGYLKSAVTKAIKKLSPSFQQFGGTRRAKKGSAQVRIVAGNQALINLANEYGLPQENVSMHRGSSAYSYWAKAGFNPSSHVRLNIGLADNQIGTVEGIYARAMQQAYNDEARELESHIASYLLQAADGLESKGIVVQ*
Ga0151516_1093116	F007260	N/A	VNLIATSLQLGMSVLQSAMGNPSFLWQGVLVRCLPAAITDANSVIAGGFQDNIQARILVKLADWRLADSTLVTVDASVWSCDVGSSPDRLLLESGGQLWQENTDRLLLTFGKMMPVVGRLVTYDGKQLRIMSAKRDGSGAYYALELGAKTK*
Ga0151516_1093118	F017997	AGAAG	VNVIEQIVTALLKWLTGLAKTEPTVEDAKPDKELKQKLLDRIDRSGG*
Ga0151516_109312	F013412	GGAGG	MRHLWARGFGRLYSDAEVIHSDDGKRFLLAVVEFEKRTLANGKPYAQRVTFRSFDPEDIDCVRMLTEGTHIMFDGDCDALAEKSATGWWYANPRITGRIHEIMPPRDED*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0151516_10931

Overview

Ecosystem & Geography

Associated Families

Sequences