Scaffold Ga0151516_10825

Overview

Basic Information

• Taxon OID: 3300011116
• Scaffold ID: Ga0151516_10825
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Nov
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 14090
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000403	Metagenome / Metatranscriptome	1177	Y
F009883	Metagenome / Metatranscriptome	311	Y
F016643	Metagenome	245	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151516_1082511	F016643	GGTGG	MTLWNPIWRVKIDGVVFTNYALANMTITSGRVNIYEQANAGYVNIQLINLDQSIVDLNINDSVTIELQDSAAAFVPIFGGTVVDFEISVSASGSVGINQTISIVALGALARLPKALTEGTLASAHDGTQIAHILQDLLLNNWSEVPAALTWATYDPTETWANAQNVGLGEIDQPGNYDLAARSASITDTYSLVSALATSGLGYIYEDAQGRISYADSTHRSLYLAANGYTVLSAAQALSNGMSVSTRAGDVRNVISLNYGANSQNNLTDSDDASIALYGRLSQIISTTLKNLTDAQAQAAFYLSLRAYPQANFSQITYELTNPEIDDADRDSLINVFMGLPVLISDLPINMTAGTYLGFVEGWTWRAAYNSISVTLLLSPLAYSLQALRWEQVPIAERWNTITPTLDWANALVVA*
Ga0151516_1082517	F009883	N/A	MTLAGGLWAVMAYSVGYKEGERIGYSRGRSVSRHLSSREKVAN*
Ga0151516_1082520	F000403	GGTGG	MSDYMEIINPQTMIAKLLYNGEVVEEYKVEQCDKCSKLTKLDSFGYQKGYGNEKIIWFCGGCR*