Scaffold Ga0151516

Basic Information
Taxon OID	3300011116 Open in IMG/M
Scaffold ID	Ga0151516_10647 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Nov
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011116 Open in IMG/M

Scaffold ID

Ga0151516_10647 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Nov

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	16241
Total Scaffold Genes	38 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	25 (65.79%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

16241

Total Scaffold Genes

38 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

25 (65.79%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.947421	Long. (^o)	127.818872	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.947421

Long. (^o)

127.818872

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020891	Metagenome	221	N
F022191	Metagenome	215	N
F022193	Metagenome	215	N
F023838	Metagenome	208	N
F028156	Metagenome	192	N
F034162	Metagenome	175	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151516_1064719	F034162	GAG	VDASFRLPVTQNMPVEVELSGGVTEKRDTVSGDWQPVVRWRTVVDTEPAKRKKGK*
Ga0151516_1064724	F022193	N/A	MTDTHDSHIKDYYEYHAEQSAFFDHLAEVNKPVDAGLDEAAAMQWAESMHELTGTWNADVWSEKGWW*
Ga0151516_1064725	F028156	GGTGG	MVAPKNSIHVSGDELLARAKLCSKLLEVVDEITTASGLISEGKYWDSYKLTSKIEFMVAEVSADLHGIDLAAGGES*
Ga0151516_1064733	F023838	GAG	MFTSRQLLVLFSSALCLAGLPVTSHGATIDLDRLIRCLEAREGARWASPGGALQFTRATWSEFSRDPYLRASQPDKARQIARKALFLTIQRMEQDGIRPSVWLLALRWNCGYDGMKKRMLEPWSYAAHVHNLYYDNDFR*
Ga0151516_1064734	F020891	N/A	MTFAEHAFAFCARKAKELGRRLNKDEWLATMQAAYDSYPHDGLFASDAPVTEKLLPNGAPVAPKPKKLLPKATDEDWLKELEANPAYAGIDIRRELGKAQAWASVRGVGVSQRRFINWLNKAMTDRPLGLAAGQSSFNRPQAPKADEPAGWREWVRENSTNPDNADKPWSALDPAAQKYIISQLNGTPAVHPARPSSDPVLDWEEVPYSYKPVARQTDAGALLVGNLLREYR*
Ga0151516_106475	F022191	AGGA	MPEGIKTDGSHGRTTYSPQKLVNDLAVATLEGRGLGLKKHPRLGYVTEEDKRLFQRIVGITVEEFNQRLIGKLDNLADRIVDRMLDTVDDTPLNSLGFNLAVAIDKRQRLAGLNATQGANVNIQVNNYGSLSKEEIVARLSGKAPVPTIQAAPVELPNPNDIDVKKPVAATVAG*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0151516_10647

Overview

Ecosystem & Geography

Associated Families

Sequences