Scaffold Ga0151516_10607

Overview

Basic Information

• Taxon OID: 3300011116
• Scaffold ID: Ga0151516_10607
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Nov
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 16889
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (81.48%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003266	Metagenome / Metatranscriptome	496	Y
F033775	Metagenome / Metatranscriptome	176	Y
F054805	Metagenome / Metatranscriptome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151516_1060713	F003266	GGA	MTQDKHELVKNAADIMSVVATIGSFLQVITPFFGLIGAVWTLMRIAEMVTGKEFHELIRRKKDATDEKDA*
Ga0151516_1060715	F033775	AGGAG	MMQTDVKAISLAASGDVSAYPTRVRGLVVEPGGSAGSVIIKDGGTSGTTLFTINTIAGGETFNVIIPAEGVRCFTSAYATLANAKVTVFYG*
Ga0151516_1060723	F054805	AGGTGG	MAQERQMLDHLFNRLKEREKEVSLAMSDGVAKDFAEYKHLCGVIQGLRQAKMEIQDLVQRYEEFEND*