Scaffold Ga0151516_10539

Overview

Basic Information

• Taxon OID: 3300011116
• Scaffold ID: Ga0151516_10539
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Nov
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 18383
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (53.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → unclassified Armatimonadetes → Armatimonadetes bacterium Cent15-Ar3 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001964	Metagenome	610	Y
F002227	Metagenome	580	Y
F003748	Metagenome / Metatranscriptome	470	Y
F077447	Metagenome / Metatranscriptome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151516_1053921	F003748	N/A	MFKVNRKDAGSNYINAEGEYTVTVMKVEENLDVKGREVCKVTFATDEGASITDRFINQENTWFRVNQLVAATNHNVPDGTEVDFLGTKGSFANFLKAMIGLQLGIVTRFEEYEFNGEKKKTLRLKAMKPLAPAAPEEKPF*
Ga0151516_1053927	F001964	GGAGG	MSRNLFAPPAFKVQINGAIGWSDLKQRVVSFRTIEYASRKEAEQAAKELNPGEYTQGRIRVVPVEMPEDYDVYPVTERTNKTNP*
Ga0151516_1053929	F002227	N/A	MKLTIQSKQNAQTIIDLFNAVINGEVQEHQATPLSIYDEEKHICSIVAANGEQILELIIEREAGDMLVQQTGEPETLQ*
Ga0151516_105397	F077447	AGG	MLPKMKYKNSGNSSVEVEVISDDVEIRIGETKWSGVAYVRDGKTKLYVRTKAEFKAKFVPIDAKP*