Scaffold Ga0151516

Basic Information
Taxon OID	3300011116 Open in IMG/M
Scaffold ID	Ga0151516_10515 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Nov
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011116 Open in IMG/M

Scaffold ID

Ga0151516_10515 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Nov

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	18807
Total Scaffold Genes	31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	27 (87.10%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

18807

Total Scaffold Genes

31 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

27 (87.10%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.947421	Long. (^o)	127.818872	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.947421

Long. (^o)

127.818872

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005528	Metagenome	397	Y
F006986	Metagenome	360	Y
F025023	Metagenome / Metatranscriptome	203	N
F040082	Metagenome	162	N
F058107	Metagenome	135	Y
F068828	Metagenome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151516_1051513	F025023	AGAAGG	MTDTFEGRTYDTGVDRTCVLQLQTDFDSLRPHQRAMLKKIATECTEYGHSISLDQLKSHRRYQIGRGLVDLIMSDNCDELLITSLCHSIQGALFKTAGGAIGHLDAACAEQFAVMCRAIRWDEQDIVWNTSTDSFGFPSKEKVGK*
Ga0151516_1051518	F005528	AGGA	MRILTAILATLTSLTISLGIAQAVSAPTHSSVAVIALQPLWQADRLDPIQPIRYRHGDTSWLSSLAKQAGWPDHAIPKLTQIVLRESGGCPNRRGGDMVDKDCNITGVSEWNHRSDTGLLQINGVNYDPSRNKWAAVCRELNICTQDPLLDPLTNLKAGLVLYNLSGFEPWNPCNWKKCK
Ga0151516_1051519	F006986	N/A	VTVVLVTWHDAHSGAESWINIKDLDAEPAEVESVGFLLATGDGGKPDHVTLYQSRNEDSIDHVLHIPVGMVKTIKVLMDLQIKI*
Ga0151516_105154	F068828	AGGAG	MKQIYINTMLGTTRIDYNEHDDGDIIIIASPGTNIEAVIQEPIECSGINPESIVRFKNTEDVAFEPVWQEEKRRLLYSDESPNEKYLRDLIGDDAYENYEMQ*
Ga0151516_105158	F058107	GGA	MIVCQLCEGEVRLDRRRITGCLCDPDAPTWVGIEPNGRLLAFSQSKYEIVSIAPEDHTYD
Ga0151516_105159	F040082	AGGA	MTGDTFAMSQEIIELQTRVSELMVALERVTEQRDNAVDAAESLHQELEACRERIKSLGGQLDRLRIHLQQGIEL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0151516_10515

Overview

Ecosystem & Geography

Associated Families

Sequences