Scaffold Ga0151516_10502

Overview

Basic Information

• Taxon OID: 3300011116
• Scaffold ID: Ga0151516_10502
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Nov
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 19164
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 35 (92.11%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014489	Metagenome	262	N
F020664	Metagenome	222	Y
F029673	Metagenome	187	N
F036200	Metagenome	170	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151516_1050215	F029673	N/A	MGKTRMTKAEMITHLRMAACNENTITSMSNAFDLGAEHERDVVASIIFNMVKDQRLAQNIVDTIRVRE*
Ga0151516_1050218	F014489	AGGAG	MEMKQQHYAILKRLQYGASSLKRFTDKDTEVGNQGFHYLRYLNDLQNFGYALEIGDVWHITGFGVAKLAEQTPRVSKDRVAAGTTTETYDGADLKQSGIREGAFDFLQYPSKFGDNLVFPRNQGATV*
Ga0151516_1050226	F020664	N/A	MHGHLFKLTEAERHILKTIGKGSYAEGVRICIMWGAHFWNLGLNTEMDLKHIGLVTVSSTDNYPHE*
Ga0151516_1050228	F036200	GAGG	MSAPLVWQALWDAMEANPDKWIDTTEKMYWDMLEVLPPRKMIGRSFLVGEALRDDNGEAVYSCFTKLGDAYRAKNMTVKQFLEAFA*