NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0151516_10445

Scaffold Ga0151516_10445


Overview

Basic Information
Taxon OID3300011116 Open in IMG/M
Scaffold IDGa0151516_10445 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Nov
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)20273
Total Scaffold Genes49 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)31 (63.27%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameGangwon-do, South Korea
CoordinatesLat. (o)37.947421Long. (o)127.818872Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000263Metagenome / Metatranscriptome1424Y
F001507Metagenome / Metatranscriptome681Y
F014849Metagenome / Metatranscriptome259Y
F034573Metagenome174Y
F035304Metagenome / Metatranscriptome172Y
F093845Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0151516_1044517F093845AGGAGMIPVKLTTTNGTTKGMSFDTKENVIKFIGLYANALPIGTAINIDAPIIGIHSGWIQGKAKVT*
Ga0151516_1044527F014849GGAGMLLPTDIIAIVIALAGCLIVMCLFWKQNIAQQKEIKRLRNELRKMLKV*
Ga0151516_1044539F001507GAGMTQRPFMKPNTIEELVNEIYEDNYSHFELIDNMNSGDCDCYLHATMNTIVKYWGE*
Ga0151516_1044542F035304N/AMDLNTFREYIRLHAISLEQDLENEDGADSIVPYLEGAIHVSRHYLSVAEGMINSTNERIN
Ga0151516_1044543F000263AGGAMNAEDIGLPPHLQRMVNAGVSGLDIMHGELKNLMLMAEQELSEASEREQETKEAMDSMVRTEAEGRLDALAAIYRLTYDLSFAIAEAYNLELKAKK*
Ga0151516_1044547F034573GGAMYSIRRGHQTTKEEKAAQKISVLLSDFTLDLEKVGYYLARATPYLIYRRSLEVLESAQFQSETVEINRIGYSHDKLF*
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