Scaffold Ga0151516_10435

Overview

Basic Information

• Taxon OID: 3300011116
• Scaffold ID: Ga0151516_10435
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Nov
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 20555
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (23.26%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036214	Metagenome	170	Y
F038601	Metagenome / Metatranscriptome	165	Y
F056571	Metagenome	137	N
F082606	Metagenome	113	N
F097251	Metagenome / Metatranscriptome	104	N
F101081	Metagenome	102	N
F104787	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151516_1043516	F082606	N/A	MSLVVLTAQCSGIVVSTIPTGQKTYKMSPNGRGVRVERTLWRFNPGMPCYVRGWPQHEVTIIDKVEGCTWPTYLVQRFDTGATYKVSQLYLSKRPIENR*
Ga0151516_1043518	F036214	N/A	MDHDAWEWMQLKPDPTSAFNIEKEARRLEQTPNAGPIAAQLFRAWNMQQTLLQQATNRIAALELQVMEHERQAGT*
Ga0151516_1043519	F097251	N/A	MIILTDSQLVELTNRIGQIQRIIDSAQVIKATPAQPKTVTEAATPQPVVKKRKGRARRVMLNAGQVAEIKKRLAAGNESAARIAKDYGVHVTTVNLIKYGKTWKDIQVPA*
Ga0151516_1043526	F101081	GAG	MAGTPVDDRIEAILGKYDLLDPDQYRDAVAELTTYLLTLSNRQIKRSLYHQRLTEKLHLEKCFNHETDDPQPL*
Ga0151516_1043532	F104787	GGAG	MHQAFDLVEVRRLLRRGIDAKHWTLQDLDIPSQGWVITMEDAKRIPGFTPRPYRNLLRDEPTPTERVEIVSPRDFAVVEAPADPVQRGGAPLLPRANGDMAEPFSDAGVQGQEGCVGDETDHGDQAHLGTPWEGRSLGAGELPDDW*
Ga0151516_1043533	F038601	N/A	MKLYSPEAKGKYVWQVADSKTRQVSYSLTTTRTAPPDACYGHPIGKYDDQGLYLTFCPNVGADDPKSPLAARYVVHPMATAERDRSDKERMWREF*
Ga0151516_1043535	F056571	N/A	LARSTAAEVNFRVDTIYGLLTEGQSRGQIVQFAANQWKCSARQADEYIQRARIRLEEDAAMTRPAWIAEALGRLRTYEQSAYRRGQTQVAINAVQLQAKLIGLET*