NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0151516_10422

Scaffold Ga0151516_10422


Overview

Basic Information
Taxon OID3300011116 Open in IMG/M
Scaffold IDGa0151516_10422 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Nov
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)20810
Total Scaffold Genes39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)32 (82.05%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameGangwon-do, South Korea
CoordinatesLat. (o)37.947421Long. (o)127.818872Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000368Metagenome / Metatranscriptome1223Y
F002827Metagenome / Metatranscriptome527Y
F006743Metagenome / Metatranscriptome365Y
F010680Metagenome / Metatranscriptome300Y
F016263Metagenome / Metatranscriptome248Y
F020162Metagenome / Metatranscriptome225Y

Sequences

Protein IDFamilyRBSSequence
Ga0151516_1042216F016263N/AMCQVRRKPMPKCGVCGWSFSDRTLMKHAETPCGEESEKAGRYLPEIDDLIKEIEEEQGDE
Ga0151516_1042218F002827GGAGGMNKEYYQAKADLCRDLAIKQMVNGEAKEAGANLIRMVNALNEINLINYKEEKDNEVRYK*
Ga0151516_104222F020162GGAGGVDDDKDYVPRSITLADFLVVISGFAVNIIRAIEMLASEILDLAVYNANRKTKVSKVWEQFTSDLEKMEDNNG*
Ga0151516_1042221F006743N/ALVGEGENGSASTIFGPVKAGLTTTHKTQSQALSELLNSLEREVESLHSKYCEAYVTLTSVMDHLVRLTGLLLEKDTTKIENY*
Ga0151516_1042223F010680AGGAGGLAIVIQLSQAEVRVCALIAVERWLVKFGSEDRPNYAAGKRFGKLEPEINANIRANVAEWAVARHYNLGWNMPWYPNDLHKARKNISDVGDLEVRTIRTQSAIPFWKKDAGRTIVGAKVLDDEYYSLVEIYGKFQADDYMNDEYADLSIEGWRVPVELLEV*
Ga0151516_1042234F000368AGGMETLKQVSLTWFRAAASAAIALYLAGETDVKTLGAAALAGFLGPVLKWLDPTAKEFGRGAE*
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