Scaffold Ga0151516_10406

Overview

Basic Information

• Taxon OID: 3300011116
• Scaffold ID: Ga0151516_10406
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Nov
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 21169
• Total Scaffold Genes: 49
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (51.02%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010247	Metagenome / Metatranscriptome	306	Y
F019968	Metagenome / Metatranscriptome	226	Y
F019996	Metagenome / Metatranscriptome	226	Y
F024771	Metagenome	204	N
F031868	Metagenome	181	N
F037125	Metagenome	168	Y
F070036	Metagenome	123	N
F085365	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151516_1040616	F024771	GAG	MNDKKYIENFNHESYENRTKNYLNISEDRFVQYCTSRGYLYRKLGLNAVSDSQSFAESVIPLFAKLPTLIKSFPDYFVYAPKEAHKQEQFFVELKNATWEQGKTLAKIKVRDIKRYIYFEQSFTNYHTRFTICFPLADKIIFKSVDQILKLLPKSQLKYFPNDNIEYFEVQLN*
Ga0151516_1040619	F010247	AGGAG	MNVQGVVKYVYDNRLTKDGTPNKFPNFKFKVNDQEIVLWSAIKPSFLEKNKTVSVTCGASKKNGSLFVLTKEDKTPMIQELPTGANPKPDTSFNVDDFEADNFNTAVTTIEKEIADRPVSKAFNKDEYMFVMALLKSGIESGKIDVTKEEIDLKIKDYKFLFQINFHN*
Ga0151516_1040622	F031868	AGGAG	MKTVKQEIEDLHNQSKKDRYFASTYAEYYYTLLDHSDLTLDEFYKLYPQYDLEKTDSLYWKQFMKQWKETWKPNTI*
Ga0151516_1040628	F019968	AGG	MAKREIGVICSMSYYEMKMMTAVLSRILLDNEIRGEHTKKRIFNLISKLNGMLTKQGYKNA*
Ga0151516_1040640	F019996	N/A	MSKCIFCKRLMINKLEQHIKACHKCIVDLLMKKHNLKVKKQAPISINTKKYGKV*
Ga0151516_1040643	F037125	N/A	MIDKKQRGSNDIEVIIYELKKEIDRLNEELQIKEIELKKLRDND*
Ga0151516_1040646	F070036	GGA	MEKKLLEKRFVSQCRNPNIVSVPIKFIRYSNQFDKHNWLSLKVRSERDNLYLNDNLAKRRLKTLPEIDNLFNPLILWANDYLICIFGNKRLKTAIDKGYTHIDCLIYTNLDRAVRVGTSIWNTFKENKLSKVDYLLTTDNQGITDISKYMVEEKQFIDIYATHQQILVREALNCNEDIMETGCGYYSTPLLVEIAKAKGIKLISFVQEINWARRFDYLIGSHYQQIQIDFAKEIPLTQRFGMCLLDHEQLVKDRIKHLNHILKHTDTVVIHDADIVHSFNFLHKPHTIEMHKHLTPNTAVIRNV*
Ga0151516_104068	F085365	N/A	MIYTTEENNFYSKENSMLDYKSIKEYWSKFYADAFEDAKSFWKNYLDTVQNIYKK*