Scaffold Ga0151516_10390

Overview

Basic Information

• Taxon OID: 3300011116
• Scaffold ID: Ga0151516_10390
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Nov
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 21942
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (72.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006385	Metagenome / Metatranscriptome	374	Y
F009885	Metagenome / Metatranscriptome	311	Y
F013527	Metagenome / Metatranscriptome	270	Y
F021109	Metagenome	220	Y
F030990	Metagenome / Metatranscriptome	183	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151516_1039014	F013527	AGGAGG	MNNYEFNAFITVEAESYDEAIDVFQFQLKYGINKDNVYVADINELEIAE*
Ga0151516_1039017	F021109	AGG	MNTLNRIVAEQQARYKIEHEANLAKYPWIKESIEAYRNATPEQLAQVEAILRKRGQIK*
Ga0151516_1039021	F009885	N/A	MYNSVIMTATDWAQFILALLSIGAIIIGAIRWYIKIQVKPIVDAVEDIRAETKTNGGTSMRDEIKSIKLEQENAREKRKATSDKLDHMYEVLLDFVSRSK*
Ga0151516_1039025	F030990	GGAG	MPDVVLSNDDLTVLAGPSTVELLVDIGPTGTRGSNFFVGVGNPNSNAGLNPILNDMYINSAPGTDYGYLYQYVSEPGGNTWIEVLKIAPAIYSKIHTVTFGSGSDADYGSGMIIIPITNITSVTGLQANNFNVQYSIINAKPLATSISSIAVSGSNLAISLEASKYDGTWDDLSGEISVHLFISVMIE*
Ga0151516_103908	F006385	GAG	MILDTGTLIAIVIALGGSLTVMCLFWKQNIEQHKEIRRLQIALRDERNK*