Scaffold Ga0151516_10371

Overview

Basic Information

• Taxon OID: 3300011116
• Scaffold ID: Ga0151516_10371
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Nov
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 22635
• Total Scaffold Genes: 69
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (33.33%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (40.00%)
• Associated Families: 10

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007359	Metagenome / Metatranscriptome	352	Y
F010746	Metagenome / Metatranscriptome	299	Y
F010897	Metagenome / Metatranscriptome	297	Y
F014486	Metagenome / Metatranscriptome	262	Y
F016115	Metagenome / Metatranscriptome	249	Y
F016774	Metagenome / Metatranscriptome	244	Y
F022820	Metagenome / Metatranscriptome	212	Y
F025679	Metagenome / Metatranscriptome	200	Y
F026210	Metagenome / Metatranscriptome	198	Y
F035200	Metagenome / Metatranscriptome	172	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151516_1037112	F022820	N/A	MKHENRISKILEKRILKDEDPKLISQIDKYLSELEVVFVKWAKAHPNWKESEE*
Ga0151516_1037115	F007359	N/A	MRQIKLYKQNLGANWVIGIEGSKDKIEQFHNRVYNWGGTNGKLKWMSRDFAYFWITLDRLERVMFKYTMNSLSDKLGKKFRNRKGGLKEIVMNRVRNTIDNIPVENFVRTEQVEPTYSLGQVSAEKLDHDS*
Ga0151516_1037121	F035200	GAGG	MNIKYIVLRDGYRVSEDMHTDLKEAEAEAEFWRSVIRRWPDGTKVIIKKIGGDRA*
Ga0151516_1037122	F010746	N/A	MTYHCAVSGEAIPPERVEALQVLGVPESQWTKKEYSQVKKLRAVYAGDDGSNDIVLCDKVEGGSLFESEIIAEVEE*
Ga0151516_1037123	F016115	AGGAG	LKILEESFTSKGFKLQQVKRDGDIAIYKKQLDDPESENYHYEVIAIKKHNGYEIAGVKMPPAEMYPSDSQWGDWAFTCNSIEDANKRFGELQEKLTNYNATSILPSGEKRGRGRPRKIA*
Ga0151516_1037127	F010897	GAG	MKLINTTKLCSDKLKEIIKWCMPDGVFLKDIGKIDFDNTKLGWHGRAWGSMRVHIGVPEYKKYIKPYKSGGFRGYLPVKTYSWEESLVEIIAHELRHIYQYKKNKFFHGVKKIRKYNMGTRAKLSEVDASLYAMRKVREYRKNNIKFSIA*
Ga0151516_1037157	F025679	N/A	MTKTFKIGEYAVGGKIRVSIPKTLTNIKIDILDYNDNKLVNQYIYYSFDRIRIERDLFEMTSSYWISQITDWITKNWKVEVYHKTPWYNV*
Ga0151516_1037158	F026210	GGAG	MNNANPLDYDAKYPPTADTSTNDKAKIEIMERNIGREVMFQIDGTQFYGKITSVPNSEHYCVLVGKSWDWYIREEAIHFVTNIY*
Ga0151516_103716	F014486	N/A	MKTIKDILSENEETFYPWTDSENPPLDANKNFVQWQREIDEDFEGWRANM*
Ga0151516_1037168	F016774	N/A	MPQKKSNKIEFLTEHIASLNHWRDELLKLEKTYFHKDLEKERTIRNMINKYLDDVLEYNKKYKEKPKN*