Scaffold Ga0151516_10354

Overview

Basic Information

• Taxon OID: 3300011116
• Scaffold ID: Ga0151516_10354
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Nov
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 23869
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (15.79%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (11.11%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001640	Metagenome / Metatranscriptome	659	Y
F002778	Metagenome / Metatranscriptome	530	N
F006590	Metagenome / Metatranscriptome	369	N
F008815	Metagenome / Metatranscriptome	327	Y
F009808	Metagenome	312	N
F025030	Metagenome / Metatranscriptome	203	Y
F035767	Metagenome / Metatranscriptome	171	N
F092040	Metagenome	107	N
F101173	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151516_1035415	F092040	N/A	MEVEMNKYVIKFEDGKSVTVSAKNLEEAINRFKELRIETATKEIRVMSSYELYNRHKAKE
Ga0151516_1035416	F009808	N/A	MKKNFNNQTFEWLFNDIASSMPKIIFVGIILTYLITAVLNVYFLPLPLLLSIPASLMLQFGRFAIVFIDFLNPSEKRSPYPAKVAAGATVVALLELYFSIQGQATGAEFYAMFIFISTVICFGYFLEIQFIEKGIEAYGIGVKTPRKRNTTKASKEPVRMNPTVRSVQLALAIMLVLAVTTVNGQNNHFMAYNTMSLEKIGNKMLERSYYSEADNSYTVDTIHYDMLSGINLWDGYSRTTYDNCLFMTYGTQNLMYFPLMELWKYGKKYYDYHDLLKFVSKYVKRNFLNKKINYDEIHRHRSSHETKWVSSMRD*
Ga0151516_1035422	F001640	N/A	MKKILFFLLIPFLAISQDVVTDTVYIQKQGNIYYIVTMTTFSDSTITGNKQILGDSLTAIQSLVTDAERQSNTLAIHAKPLILKSKAVKRINYYNNLHQQISGRPVYTSTALRDSTAFLGDWTLNFKGENILGEIQLNANKRLIFNPDNGKVYTISTNLLLSTFTNQISFSFNGVKYDLYKFANGKFATVDNDVRLIKKE*
Ga0151516_1035425	F008815	N/A	MPNYTERTVLSKPRDFNQVANNAGSGGVVNNNVTETINNVTVNGSAVSIFSQEFLNTSSNVLTWTQNNGKLPVTNLNASVHVYQNGQKLIDSQYTITAPATITIDSNTHYDGSNYIVFAINIV*
Ga0151516_1035426	F101173	GAG	MAARFQTTVYNEKGRKIVVAIKDKVFSGMTYNFDTIGLQLQYDSESQQGQERFTPIIGSRCSLSLLINNNNLQTLLLDIGLAVEGRFTMELTAYEDDNTTVSFKWYGYIVTDLVEFEDVPLVIGYQAQISAIDGLGWLKTLDYKSAVGPYIGQDTVVQHILNCLNQLDFVQDNLVANNLPVLHTIFNWHENTTAYSVNSDYSLLTVIQHRAFYHKDTKSNYVYQSCYDVLKKICQTFGARLLFSGNQYWFIQVNEYSRTPATKRYFKYTAFGVQVAGTFTADLTLSNIQTNLPGSDLMRLSGGKWTYYPALKNVVIRYNHFAKQNLLAGVEYNYATNSTPIITTTPTLDASNPDARLSYTGILGFYAQALNPVNFEPFQFVFAVKVASIINSFPLQGFESANWTLGSGWIIDNKILEGTLIATEAFYTTFTVTSGRKYYVKIKVEINNSGSLRLRLGGVTKTITESGDYEYVILSTNTNTLKLDSVSSPGFTGKIKSLQVKQENKYLKRGVTYTNGFNFQLEPATWENSFYEYEFNTETITADAAFVAYKTITFDTLDIPESAEYVWEMRLKQMRNEAGSSIISNFTVSYLLSNNYLEFLPTGAVSGQSDILEYGSDNDDKSSTIFSLDTYLGDGPSKTTDGGLKVLESGSYENSSSWDVGSGSGFNNVTQLLVNEVIRGQLTPKLRMVDMPFQNLSVDNPYLPHKVIEYSSGYYVFERGSLDLKTEIWQGDYFKIELDA*
Ga0151516_1035429	F006590	N/A	MKTITIANTTIPIKFGMFVLGTFLRERKLKLSDLSLLGEDLLLALELAFTGVEHGYKAKGEKCPYTLQSFCDLVDTDMGGITRIMEMISNEISPPEDESQKNVVAKAESSHLNTSNVFVSEF*
Ga0151516_1035431	F025030	N/A	MKLRLLKEWNGKEAGKVGVFLSEYEEQMIKDGIAELLDEDFVVEQMPQKQEVQQDPIYIPIPVPNSYFADEANEENITKQKNK*
Ga0151516_1035433	F035767	N/A	MGYLSAKQINHLKDLQKSNYAGRRSFQGMSLRVVGLADAVIEFAELMEQCTLKEQSRVIDSATPIALEVYRSLVPVSSKPHRISTNPFKNKKMQGWEQNDRASMWVQPGNLRKSIIDLSKNLVSYKRAVGAIGPLYKRNTMNRGINSSEGTNGFYAHMVFGSTRAWYNKIVVKARNLSREKVIKTMRDECIFIMQERPKKFWQIS*
Ga0151516_103548	F002778	N/A	MKEWNSKMLEIQAFCDEVNAWISTAPSAEMLDECDEYLRQLSAYYSRYTVISGMNESIFAQMMMICIRDMPEEEYKRIKHSSTLTDYYVKGIYPKATAIFEQCRAVQKLLLVTSDNYRTLLSSFRQERILVGHMTT*