Scaffold Ga0151516_10328

Overview

Basic Information

• Taxon OID: 3300011116
• Scaffold ID: Ga0151516_10328
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Nov
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 25346
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (41.03%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007911	Metagenome / Metatranscriptome	342	N
F009066	Metagenome	323	Y
F024499	Metagenome / Metatranscriptome	205	N
F043823	Metagenome	155	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151516_1032814	F007911	AGG	MPAVTMLDRLIEAAFQELLSATVTGPTYHLSHDKTENVPPAIIIKASLGTEEPVRGSGVFSIPVEIMVDDSYDDITVEAHTQKCSKILQCFYDSTSLSFRLNATTAIGSARTYSAKLESSEASANNEERSYTQNYKLTVIAYPNSIAS*
Ga0151516_1032835	F009066	N/A	VEFTVTPEHEKHLAGILRDLTRDLDAKYRKGQEEHGGALWRRPVWKDAWDEILDLCTYHHTLKMQLSVIAEIALIGASDESVVAAQSRESCRQILAVLEGFPSAADKK*
Ga0151516_1032838	F043823	N/A	MKKVKTNLTIDPKIKRNGERLAKKGGLSLSAFITTLLVKELAKENRR*
Ga0151516_103288	F024499	N/A	MSEFTECLKESLAALYDQTGTAATIGSTGVTGILSAISRKENVDLGGFDLDLNSTFTIDVANLSTTPTIGSILLANSVSYRVASIDTSVGSYVLGLREV*