Scaffold Ga0151516_10250

Overview

Basic Information

• Taxon OID: 3300011116
• Scaffold ID: Ga0151516_10250
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Nov
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 31069
• Total Scaffold Genes: 52
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 39 (75.00%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008023	Metagenome / Metatranscriptome	340	Y
F012098	Metagenome / Metatranscriptome	283	Y
F019997	Metagenome / Metatranscriptome	226	Y
F089937	Metagenome / Metatranscriptome	108	N
F091303	Metagenome / Metatranscriptome	107	N
F093195	Metagenome / Metatranscriptome	106	N
F093225	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151516_1025015	F012098	AGG	MPKAHKIGSKPFVQLTNFPFKWGFKFIVRGWTQEIEPPYRTSTPLIVRLPRYKALVFGAWSGMKDEEEALSTALGRREVTYDDFTEEAGWTPAPDSDREASIDNLYSRFDFMDGAVDVYDWQTYHDLAKTTE*
Ga0151516_1025021	F093195	GGA	MAGAIDKGHQSYNDFNSGAAAKQNPLTTVDRKMLDFAVKVSRNPVVKTHGQILRNFGMYPPEFWTRAQKLSDHPEVDPQTKEQLSNIFSDPSRPGPMTGGSPINVNGKQFSHGLEW*
Ga0151516_1025023	F093225	AGG	MTNNMIITIFATVGIITAALLGLRQLIEPYKEKADLFMSWFEDFKRDWSGEEESPGRDRVPGVMERLNRLDGELSSNGGKSTKDVVNKLYDNQGVLMEAFVEMGERLISIEEHLAVNKSKEPV*
Ga0151516_1025024	F019997	AGGAG	MDKKALEAAAGTYLRAAAAAVAALYMSGITDPKTLANAFLAGLLGPLAKALNPKDSSYGFGAKK*
Ga0151516_1025027	F091303	AGGAGG	MAQLNRKPLTINPNRKTRKQEFSFNTNLGYKSKANPSVVTWASPGKGVQGESVNSQNNASKLIINRNWKPL*
Ga0151516_102507	F089937	GGAGG	VATIASLADRLRSEIGDIPKSFVYQFTADGTTNRFLIPYSPLDGANLIVTKNGTDISADVEVEEATGYIVCDDVPADGDDFIVAGNYFRYFTTAETQTYISTAFLEHSAFHTDAYGRSVSIQNLPTLEEYPVIIYASTLALYALANDAAFDINVFAPDGVTIPRSERYQQLMQMIESRKQQYKELCSQLGIGMFKIDVFSFRRISKTTNHYVPIFQPQEIDDRSAATRVHLPTPTYGNVETPVSIITQDLFVYEGDAYEFTIVLDFEVDTYTAKAEILGVGIPGVITSFTITFPDVGTADGAGLRTLKLALTGTQTRMLPRTSYYDVQLTKDGVTHTYVRGKIFKTEEVTE*
Ga0151516_102508	F008023	AGGAG	VANTQTSPLDATGKAAEQAAKKNAAELKKRKEEISIATQLEAESLEKDVFDPKKPDAPLVLDEIENVGVSTAGDMVIIRTITDIEDMSYGVGNTYTFKAGVKYRVPRSLADYLEQLGYIWRPN*