Scaffold Ga0151516

Basic Information
Taxon OID	3300011116 Open in IMG/M
Scaffold ID	Ga0151516_10249 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Nov
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011116 Open in IMG/M

Scaffold ID

Ga0151516_10249 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Nov

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	31143
Total Scaffold Genes	46 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	36 (78.26%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

31143

Total Scaffold Genes

46 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

36 (78.26%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.947421	Long. (^o)	127.818872	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.947421

Long. (^o)

127.818872

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008296	Metagenome	335	Y
F010232	Metagenome / Metatranscriptome	306	Y
F015719	Metagenome / Metatranscriptome	252	Y
F029029	Metagenome / Metatranscriptome	189	Y
F060868	Metagenome / Metatranscriptome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151516_1024910	F060868	AGGAG	MADYIFKTPTVREGPAGRHRLFYFYKLDRGISIAKSGGTYSQVRYPVDEDIADYDEFYRGGYNHIVNDATRTALIAGGVGVTSANFTAL*
Ga0151516_1024925	F010232	AGG	MRTREELFKIKEAFAYAMLDLLDVYDELLATDRVWVAPEPTVNDLLKNDEEANA*
Ga0151516_1024932	F015719	AGGAG	MYYSEIDGTEPTISIQVKDTKYTFTNESLTRLIEEKESIKTELLQAERKLRSAQFDVKEFFQSRYETDSDEIVCEVGDINDLLSSIGSDQLTKSWSATVTITATVTGIEAPNAEAAREILDDAFEINLTVDGDVWVDDISIDSAYPEA*
Ga0151516_1024941	F008296	AGG	VTEAWVQEYDLLVSTLAIEYSRKYSIVETADIKQILWMWFVTHPNKYTEWSKLPPKDKEKLIAKSLRNAAITYCEKEKARKFGYDMVDLYYYDPSVIEAFLPSIISGSYEIPIKIKDLNFKPDKSGQVTDGNNWLVLRADIEKAYNKLAEAKQNILRLRFSVENCEWTELGKELNTSADGARMRVSRAINSLIRILGGWRTYTDTDNIEVKEEEDDTRA*
Ga0151516_1024942	F029029	N/A	MTQEPKEIKDLFKKDYSRAMDLRGNSIGDICVCGSELFTAIVAFEYGEICFYFLDGECVDCGSLVTLPTPIDDHGMDCD*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0151516_10249

Overview

Ecosystem & Geography

Associated Families

Sequences