Scaffold Ga0151516

Basic Information
Taxon OID	3300011116 Open in IMG/M
Scaffold ID	Ga0151516_10202 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Nov
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011116 Open in IMG/M

Scaffold ID

Ga0151516_10202 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Nov

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	34625
Total Scaffold Genes	56 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	41 (73.21%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

34625

Total Scaffold Genes

56 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

41 (73.21%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.947421	Long. (^o)	127.818872	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.947421

Long. (^o)

127.818872

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001991	Metagenome / Metatranscriptome	607	Y
F006660	Metagenome	367	Y
F050326	Metagenome	145	N
F099179	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151516_1020235	F001991	N/A	LVYNQRAYWNLTLNNSDGTPRNLTGATITSQIIRRQLSNVRDSRYGLTFDISDYTPPPSPISLTIANENLSGGSFTLIIDESAWSVLSTDSQLDINAANPVGFSGNIKIAIPASGTTPAQDLIIFLLFLVRSDGVTN*
Ga0151516_1020238	F099179	N/A	MRYATKYDMPHLIEMMKAYADEAGIETLKQNQNEGHVKTLFFEMIKGRGFVLIDDQFRGFLAAYVTRNFWNSSVKELHEVAWWVVPEFRDTSVGGKLWLRFNKLAQDMLDQKRVQIVCTSLMPNSPNIDYTRYKFKPMQATFFRE*
Ga0151516_1020239	F050326	GAG	MTALNSASITHGEFVKLTTSTATYTFCNASAAITVGGNTFSGLGSLLSVGAVNREIKATSIDMIIGLIGIDPTNISIVLGSNIKGSTVEVWRGFFDSNYQIITSPSTQFFKRYQGIVSNISITEDWNDNIRSRTATASISCTSFRSILENRIAGIKTNLSTWQQRYASDTSMSRVAAISGQYFDFGAPPKSGSQSDPGTVQPAQADVNDISQAG*
Ga0151516_1020240	F006660	GAGG	MSFQTILDISQTITVNNRRMVGQQYSRSGQVRTALYVTSVPWVFTVKPHSFLYYPQVRDVIQTIDNLDRQTAATITFSSTNLQWFTAYQGQLSSVQAAALTLASVPAANATTISVGNLPAVASGTIVFAAGDFLQIGSYPYKVTAQVLRGSGSTVSVTLHRPVIGTPSVGTLTAVGSACTFSVVAEVCPTYTLRPMTNGAFVDWDADFVFRENVQ*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0151516_10202

Overview

Ecosystem & Geography

Associated Families

Sequences