Scaffold Ga0151516_10160

Overview

Basic Information

• Taxon OID: 3300011116
• Scaffold ID: Ga0151516_10160
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Nov
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 37320
• Total Scaffold Genes: 61
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 52 (85.25%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031406	Metagenome / Metatranscriptome	182	Y
F047573	Metagenome	149	N
F058001	Metagenome / Metatranscriptome	135	N
F085188	Metagenome	111	N
F096288	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151516_1016011	F047573	AGG	MKEIIFVGVFALGVVCGWVANQVDFDHAGCDDYSGKYQRYEAWLSVKDGTYRCFWIEKDYPHRVKMQGVIDVK*
Ga0151516_1016013	F031406	N/A	MNQSHNEEARYHFIMMDFVDLIGDYGYDKVMDDLSTAIADKVNRLVGRAVAEEIDE*
Ga0151516_101602	F058001	GAG	MDKNKEDIVGMTVVTAYKNGTYSLESSFDLEETYELLKDALLDIEDGTLEASIDYSTQTLQ*
Ga0151516_1016059	F096288	AGGA	VATTPDIIQISWIDAVADSGWEEKVKAEIHQCITVGFLVHETDEAICIASTWSDTETNARMHIPKAWIKDRKVLNEATVSESKGTKPAKVGSKRVAKKVSATKRTRLTQLSDGQSWGRYSDVSVGEGRNTSLN*
Ga0151516_101606	F085188	GGAG	MNKLVNINGRLINPDSVTYIIDREIVFNNGHRWVATEPEIQELLAVMFETPRPVSTTPVVAKKAVKKK*