Scaffold Ga0151516_10158

Overview

Basic Information

• Taxon OID: 3300011116
• Scaffold ID: Ga0151516_10158
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Nov
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 37477
• Total Scaffold Genes: 61
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 39 (63.93%)
• Novel Protein Genes: 19
• Novel Protein Genes with Ribosome Binding Sites (RBS): 13 (68.42%)
• Associated Families: 19

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005584	Metagenome	395	Y
F005702	Metagenome	392	Y
F005846	Metagenome	388	Y
F006138	Metagenome / Metatranscriptome	380	Y
F007164	Metagenome / Metatranscriptome	356	Y
F008741	Metagenome	328	Y
F008938	Metagenome	325	Y
F009142	Metagenome	322	Y
F010463	Metagenome	303	N
F011284	Metagenome	292	N
F012433	Metagenome / Metatranscriptome	280	N
F014487	Metagenome / Metatranscriptome	262	Y
F019290	Metagenome	230	Y
F023059	Metagenome	211	Y
F023833	Metagenome	208	Y
F024265	Metagenome	206	N
F033350	Metagenome	177	N
F035218	Metagenome / Metatranscriptome	172	Y
F090073	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151516_1015817	F008741	AGGAG	MSVKTIKYSQRLGDVLRCLPACKYLADQGHEVFFDCFDQYHGVFDLVSYVKAGSKGDVLDLEIWPNRYNDFIKSRKTWHDFVYSHPEIKEADKTNIVLDKLDDKSAEGLPEAYHLVAPFGISQTFYRNPLELIQDAVRELGKDSVFVLCPPDIKIQGLNTYTAQSVEQMVKAIRGANEFWAVNSSPIIIASAVRREKESKFWGEKNESEVQNVFHFQGLIRMD*
Ga0151516_1015818	F005584	AGG	MAGSIPTSYFATDLSYMIEDLYQSVTGLGSSTVSASVADLITASELEIGGEVFRVTQSLVVLASGISAPSIGSLCTVSGVERMIGGFSQSTDGLSYTIELAEITT*
Ga0151516_101582	F008938	GGA	MIRQKELCDKWGLTRGAISQLVKAGMPLTSVSDAERWKIANQKKPSRARPILSASANLSETSENSDAESIKLENPLGRLHRARRAEVVAYSLVQRATNERNPVAMRAAVQGWGEAKKRVAEAEMEHARWEEMNRITLRMDEVQEWITKWHGGIRALLDAMPSSLAARANPSDPECAKQAIQDGVNQIFITIQKGEGAFK*
Ga0151516_1015820	F009142	N/A	MTNSVQINVEDALDNLLANIPNLNVYKTNRVGAKLFPSATISASVGGQILGNYTGVYEVSVAIDYSDTAAKISQEDFDAEYCSIFEAFYSETPPLFTKIQNNILDTKVYTARITGQTPTIKTAKRAWQRGLKMSLICTPSELDDGLRYLDFHEKRNSMYVAVI*
Ga0151516_1015822	F035218	AGGAG	MPLTKNPSNIDNFIFASGRMKMYRVGLAGSYTKVTGTGGVASLANTGGFHMNLNAGSSASGTSKIGYFDPTAALMTASAGKIDYSKRIRFSIGGMMYMASTNSVIRMVFGGTGNATDAPLAGVNGLTIKGFGVEFALQSSVIQARLIGYNASYLTPTSYTTLTNGFGTTASDNRFFGVVIESDGGGNINLYGADSSINPNINIGQVPLLTLTGGPTNDTSTNRFGPEVHCSNSSSSPTASPSAILQSTHWLLDVQ*
Ga0151516_1015823	F014487	GGA	MKLLLVGFLLCSCSPRHTDNNALPRYSDMGAAEDAGKVK*
Ga0151516_1015825	F012433	N/A	MSADQIGELRERLARIEERQTNIIAILERHTSELAQWSNKINTKVDTLERDAHTIKTKLWLVALVSGAVFSTIWELVKVRAFPR*
Ga0151516_1015826	F006138	GAGG	MPATTIGQANLTFGLTAETIGLVQSFSETRNTEKVEARNASGDITGVAYYNPTTAYSISVAVTGLGALTVGGAYAALANATTVGTCRIDSIALNKTNTGFVTVDISATGYPNVS*
Ga0151516_1015827	F019290	N/A	MEGTSYWGTTNLKVASCVAAFGGTLRQNDPVTHIILENGTRQVTFWFNGGTGAEAKKQMECKWSDMSCDVESPIRYVRAALENRETLLGLVKTKAEPIQIIKRGGQTLLVPLNAKPELKKAILKAI*
Ga0151516_1015828	F090073	AGG	MSDILDDELNATFVRPSRDYKGQPLAEYTEGSRLLMIQCKDQQDSSVYFIWSFLYLHILLAKNRKEAIKLAWDKDAFREKVLDWVADKNSEDRELATNIVSSIIDEASKARVSVVQSGEGTTLGNE*
Ga0151516_1015837	F023059	GGA	MWEAILASIAGLIGIIAWWTKNRAKTRKERDDEEIAYKRRLRDTEVDSWIHRR*
Ga0151516_1015839	F011284	AGCAG	MTSEQGVEKATQKHFTKKHELHMTTLQMAAVESMEKKYKRGVEEHGGTKLWEMPSVRLVENAIEEATDQLTYLLTLRSQMHIVLELARDGCTDETLTNPRARECCNLIYTTLTGQTKPPL
Ga0151516_1015844	F005846	N/A	MTSSIHPARPQASAVPANHEEFSDGFSIEGKLNGWRGLFNQKTGIGYNRHGKIASNHNLMVERLANAGIKAPYIDCEIMGQRTKTGKGTIVVMDAFDPANPKPYAERMKEIEHLEAVTFDVPDNKLLRFVRLAHHKINSIWAEMEFQNNKAGEVVWEGFVMKSLNDGKYPFISKPSYCSYEWQKQRIRS*
Ga0151516_1015845	F005702	N/A	MAEAKDSLVIFGLIIFVGLVIVRGLYLIAQHIDQQNYERRQFYLYVAAELEKMDKIVAEGNQPKEPELVLPTKNWVGRN*
Ga0151516_1015849	F023833	N/A	VQDIINDAMRKAAALERERCAELVQKLADGTEDQVIQDILNEVVVALRRLTDER*
Ga0151516_1015850	F033350	GGAGG	MSVDVDVPRVKWSMLEWKTPEEKPKNDERVLMDIGGEVVVGRFVDGSFVSRSWGHSESDVRLWASWPKAPKW*
Ga0151516_1015854	F010463	AGAAG	VIAHPQELVLAATIHRVKLCEDKLREFEQMVTTLTSTMAQNRAELASKGLEKFVLGVTTPLDIPKELVPTYGKAGARRNREYSTVKKRWTLWKHQLESGMSMSELAKAWGVHPTTILFAKSRNFIVRKAKGGSR*
Ga0151516_1015856	F024265	AGTAG	MNEAYTTPEVKARGILTDRYPGKELEKLYATTRNQATIDMLRDAVFTLITNEIPTCTIAEVLKKTHGAIQYHLRYLEGRGKIKRPNKRCHWTEVKRENQ*
Ga0151516_1015860	F007164	AGGA	MSEKQVGMELLKTIRLLDKAKENAIEQMGQAIGLAADAGDILLSARQEGLDLEAIQTHAQINGEQARRYERVAKSRPSIQAPSPSGLKQLALWTGLLPDPIETSTPRCEAAWHSYIVKARQWLARKNIKQWSSSQKEQFLQEAKPIVDAYLEAGGEVEKT*