Scaffold Ga0151516_10144

Overview

Basic Information

• Taxon OID: 3300011116
• Scaffold ID: Ga0151516_10144
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Nov
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 38890
• Total Scaffold Genes: 69
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (39.13%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001120	Metagenome / Metatranscriptome	772	Y
F001165	Metagenome / Metatranscriptome	760	Y
F001806	Metagenome / Metatranscriptome	631	Y
F002721	Metagenome / Metatranscriptome	534	Y
F003601	Metagenome / Metatranscriptome	477	Y
F003687	Metagenome / Metatranscriptome	473	Y
F007026	Metagenome	359	Y
F015587	Metagenome	253	Y
F029405	Metagenome / Metatranscriptome	188	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151516_1014417	F003601	AGG	MTEYTDEQLLAMAMANIGEYIHDNSPHYILIEEDPRNEDDYDSWTYGMEVLPHDHTWHSNSIEIDVSPSEAD*
Ga0151516_1014423	F001120	N/A	MTKLNFDRTIGGVNITENGIKSYTKSIKLGPIQLTLNARKSGILGSLSIPGTGVSFRNIKIMWSYWALATAM*
Ga0151516_1014427	F001165	N/A	MSDIISIEDSLDPQKLSAMRIVAQMKEAADKQGVGFIGGFVSPDGKKFVMTNMEDEDMKMLMPDELQ*
Ga0151516_1014428	F007026	AGG	MTDSTQLNNKPEKYPELTWTKNEYHQLQVALDALKNIRNRECRRHEMDQHLTPETAAALDEAISLLSDELDYDPTPSEPGEPPMTASEMHDAAWREHLEAHR*
Ga0151516_1014430	F029405	N/A	MPNDYAADYLDAMSDRAYEIEEAMRESSMDEWDGIDEISSAERNACDHYNERYVINDYHD
Ga0151516_1014436	F003687	AGG	MTPASVEQLLTQDARLLARRDSPVIDQEIEEQRQAALDVFWKWQDGMAQFQDLESFCVVLQRKVDLNRDLLRWERMHQD*
Ga0151516_1014437	F015587	N/A	MTKLNIRKNTACFMRTAASAVENAKVPTKAQASGVLHDIRCRAAALMMPNDMAFILTPKDQI*
Ga0151516_1014444	F001806	N/A	MDAGTRQKRVEALEAIKNKALDMAKKGQDSLEVRDFVTSARKELAYELPNEEAFNKAVNATMAYKKKQEG*
Ga0151516_1014447	F002721	AGAAG	MAKDSRLDLGRYIQNPFNRRGEIAKRLNFDDLFASKPESGQYPWNPSRFGTQDLMKRAMTRKINLNPELNFVGNTPFFDDNSEVTPQYDMFGLGTFDRPEAYDFDEGRAKTAQRPQDQPDFDPTWMEAYKLSPTINPGKRAKNPMPRTKNPDPNGYLMAMAENRAEDEVSGKPSIAQLLDNKGLMKPVDVKKDDKEGERTANDESVETNVSPGKTTA*