Scaffold Ga0151516_10120

Overview

Basic Information

• Taxon OID: 3300011116
• Scaffold ID: Ga0151516_10120
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Nov
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 41278
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (75.68%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000258	Metagenome / Metatranscriptome	1443	Y
F001106	Metagenome / Metatranscriptome	776	Y
F006841	Metagenome / Metatranscriptome	363	Y
F035307	Metagenome	172	Y
F056615	Metagenome / Metatranscriptome	137	Y
F058150	Metagenome / Metatranscriptome	135	Y
F090403	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151516_1012010	F001106	AGGAG	MSFETLKVAELRKIAEDFAVDTDGLKNKADIVAALTEEGVTWSVYQKTIKDIEKAADEFSEDSEEILPRFNPDAQPENTLLVRMTRENYRYDILNYTFTKEHPFVAMTSEDAQEIFDKEEGFRLATPKEVQEYYA*
Ga0151516_1012011	F058150	N/A	MEILVGSNSPITHKVFWQGQLTDSDSLPVVKLYDITEDPAVSPPINPGTILATLTPIKSEVDAGTYIVYIPVSYTTRQRQFRLNWSYTVGSVSTEKNHKVFVQTPYTDMSQAIDALGLGSDFSDPNSKSYAELCNAERYARKLIEAYTQQQFYLYDDVQIAYGSGSDVLPLPYKLAELHELYQNDILLLNTLTNVNNWNYNTIISESGFGIRVNRANMLDNTVYTANGMVPPTINDTWGGSFAVGSTYRVQGKFGWEEVPDEIDLACIELMRDYFSKDKVWRNKYMKSIQTFDWKFEYNSGTYSGTGNLYADQILLPYVINKMVVI*
Ga0151516_1012012	F056615	N/A	MYDLVDSVMPMFLDVYKQFDLQDPDTGSIKKEWQFDRTVPCSAKGIISNSSTGRVGDKQVMSNKYSNDQVLQIRTSEKITLREKITNIRDQEGNVIWEELNFPSNTPTVFELLGITPMTDPFGGVLGYNSTVKRSENQIIGQ*
Ga0151516_1012013	F035307	AGAAG	MAGTKGTILRDSTVAQISAAVYYHAQVVSKLTTNKAFEKKFQSVIFKQIDQDFGLYVDAQARMNPKSLHHVYEWNKTGNKGSRLFDLNVLSTDGLSFKITSKFKPSKSSVPNNFSKRRHVFINKASVMEAGMPLVIRPKSAERLVFETGTGVVYMPKGASVTVTRPGGGKATGRFQIAYAQFFTGNLVNAAIKRSGFQQLFNSALTKAMKVPADVKKVKYSFNPNTLNMQAESAIAAAFGGAL*
Ga0151516_1012014	F000258	GGAGG	MTVDYKADVMLDLRKFLWSQLKANNIFTATDYYSDNIGQEIVPIIPIQQSPEMNQFLSGKKHIVYDKIGMSYEDNWAICCEQILFTIYSTDVSEINEIRNLMTDLFRRMDDSARDANSYSGISKKFKFFSIFIADISPTSPSEELAGFLSADVILEVKYARHLDTTGRFA*
Ga0151516_1012016	F006841	AGGAGG	LATTIYSVEEVKLQNGTTVLLKPLSIKELRKFMAVIQKTATAADQTESLDVLIEACGVALEKQVPDLVKDRDAFEDALDIPTINRILEVCGGIKMDDESANLTQAAVLAGMN*
Ga0151516_1012031	F090403	GGA	MEGGVMTFNAQYTLETGAAKKRKREEEVAYWNSLNGPVVVKSIKGDDDGE*