Scaffold Ga0151516

Basic Information
Taxon OID	3300011116 Open in IMG/M
Scaffold ID	Ga0151516_10115 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Nov
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011116 Open in IMG/M

Scaffold ID

Ga0151516_10115 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Nov

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	41797
Total Scaffold Genes	68 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	55 (80.88%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

41797

Total Scaffold Genes

68 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

55 (80.88%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C403	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C403

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.947421	Long. (^o)	127.818872	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.947421

Long. (^o)

127.818872

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018164	Metagenome / Metatranscriptome	236	Y
F029734	Metagenome / Metatranscriptome	187	N
F036663	Metagenome / Metatranscriptome	169	N
F055673	Metagenome / Metatranscriptome	138	Y
F060854	Metagenome / Metatranscriptome	132	N
F095175	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151516_1011520	F036663	N/A	VEQNKLISLVSPGERHPLVEKVRVALNIAGDDVLDAPLAEVLKGLQHTLSIPAVGCINLATLDALAVAPPEW*
Ga0151516_1011530	F095175	GAGG	MTTIIGIQEPDGCLIAADSRTTTEKGRPYSHPIVTKITKRGKFLIAGAGTTQPCDIVQHIWKPPAIPANTKDIYHFMITTVIPSMRECLRDNGFVHDEKTDEYEFLFLMAVNGTIYEVDDTYSVFLRDDGIYGLGSGSSYAIGAIASGANWKKALQIAAKNDVYTAPPFVVHRQEKK*
Ga0151516_1011539	F060854	AGGA	MARPRPTEIKLVANLLDPDNTNSESAAELAVEIIEALDESRFKRESYILVAQLARWAPVQAWGEFSTKLQVEKFMKNLSGVDAEGGRAVVVHLEQPDKLLERIGAK*
Ga0151516_1011556	F029734	AGGA	MRKVATETLSGVVKNGMVHISKADDKRVFAKVRITTNTAKSSKKIEAILSAMGQYPNFDKVLAAVLKVEPNAYLTLKGGAR*
Ga0151516_1011563	F055673	GGAG	MKILKKFEENLEYLGFEMAPVAWDLAKFPFESDDDRISVLEELTAKEAAPNVPNRMVE*
Ga0151516_101157	F018164	AGG	MAKIFRGPTMRIKLGMSNDLWFVSYPWGKTVVKKNGTWSTIVSPQDSSLADYDKVLRGGYDNPITDAEAAELTAAGYGEYIVEV*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0151516_10115

Overview

Ecosystem & Geography

Associated Families

Sequences