Scaffold Ga0151516

Basic Information
Taxon OID	3300011116 Open in IMG/M
Scaffold ID	Ga0151516_10113 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Nov
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011116 Open in IMG/M

Scaffold ID

Ga0151516_10113 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Nov

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	42225
Total Scaffold Genes	64 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	49 (76.56%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

42225

Total Scaffold Genes

64 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

49 (76.56%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (71.43%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.947421	Long. (^o)	127.818872	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.947421

Long. (^o)

127.818872

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017123	Metagenome / Metatranscriptome	242	Y
F027496	Metagenome / Metatranscriptome	194	N
F036212	Metagenome / Metatranscriptome	170	N
F039106	Metagenome / Metatranscriptome	164	N
F074813	Metagenome / Metatranscriptome	119	Y
F088765	Metagenome / Metatranscriptome	109	N
F099211	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151516_1011338	F039106	AGGA	MIQLYFNGKPCEIVSRDSSDGTVCIRYAADHPNWPFPNYTWVDPSVLSKLRQSQKQKALEDIEEAPF*
Ga0151516_1011339	F027496	AGG	MTKELLDELLYLIELQIKANIALALGHADAADKEAEREHVQYYRLVSLIDSLKDDLK*
Ga0151516_1011341	F099211	AGTAGG	MFEMYDEPVVDDGFDGITKGEYDDMHEDLSINDVLNRFVRLCQEYGFYFMMRQLTKALNAKGFNV*
Ga0151516_1011346	F074813	AGGAG	MADVQSIEEHEDGTATLHLDLTDEEIKILIQWAVKEAIKLAFLKEKNFDWGLNNEANT*
Ga0151516_1011347	F088765	N/A	MKQTLRDMMSQCWDNRMDCEHFDFEKFAEMVAFQASEERLDRCIEVLERRGYADAADIIRGEG*
Ga0151516_1011355	F036212	N/A	VYLEWVDAVASSGWQLKGKGSIASCKAIGFLTHETDDEVHLAAAVGDNECNAVMIIPKGWISQWTEIDIEAFKRKKQRKTAAKVGSTKAKRHFQPKRT*
Ga0151516_1011358	F017123	GGA	MEMKMSNSKISLHVSIMSEDDEEVQKYHADHGFPLNHMVDINVTYDSGIAWPTLLEKACEAIGAYYGYDVKDKVFVEQFGHIVNIFGHEENLRKQTDITGYTDADENPTT*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0151516_10113

Overview

Ecosystem & Geography

Associated Families

Sequences