Scaffold Ga0151516_10083

Overview

Basic Information

• Taxon OID: 3300011116
• Scaffold ID: Ga0151516_10083
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Nov
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 49428
• Total Scaffold Genes: 58
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 45 (77.59%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005234	Metagenome / Metatranscriptome	407	Y
F064494	Metagenome	128	Y
F074575	Metagenome	119	Y
F093754	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151516_1008312	F064494	AGGAG	MTQDEIINLIEANGLTLHGDIEHFAALVADHVYAKYLEPPEPKQSGTISVTMPVPIGYLCENAVGHKYFRWKKPPSTYKPIPLYTKELR*
Ga0151516_1008319	F093754	AGGAG	MGKVKQVVTLTPSQIAMVQKHGLTIEQYAKAVTRLDEHVSMTLFNPNNNPVYSIPLSELVNLWRAKYGDTWVDVSEIEDDFWSDASARLHSNKKMEELNHHSDNSPWARLKEDA*
Ga0151516_1008345	F074575	GGA	MAKINNQPAATNPGIPPNRSKADTVNMSIGNISKNAGNETTKTSGIVTRGNGAATKGTIARGPMA*
Ga0151516_1008354	F005234	AGGAG	MQYDVLSASAAAGTTTTIFAGPARIKGLTISYASGGTVVLNDGTGGTAKFSFTAPAAAGSINVVIPGEGIRCNTNISAVCAASTTAVVFYG*