Scaffold Ga0151516_10061

Overview

Basic Information

• Taxon OID: 3300011116
• Scaffold ID: Ga0151516_10061
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Nov
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 56760
• Total Scaffold Genes: 79
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 61 (77.22%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000952	Metagenome / Metatranscriptome	822	Y
F008750	Metagenome / Metatranscriptome	328	Y
F025282	Metagenome	202	Y
F029032	Metagenome	189	Y
F071151	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151516_1006117	F008750	GGAG	MMRRIGLRELLKEPFKKPTPLEVIAAELAEAHLAKLQAETGVEYAQSIVDYNVNRITRLNARMEEYK*
Ga0151516_1006121	F071151	GAGG	MNCCNANGDCTQGKDCPVRKQRIKEINDAYANGFKDAQIDDPIDDLAHTFKGLITLLTVVLCVWVVYLLIWGK*
Ga0151516_100613	F029032	AGG	MIPAQVYDPRNFTWDAWCALMAELFASNQLGTVPESLWTTWADGIAGIGRFAGAPDSRNFATWQDWAFAFNNALRK*
Ga0151516_1006146	F000952	AGGAG	MATSDQEQKSINVPQHKRIAMGEKLDGTSMQPKGQSQGGKSSGGGLSHVKAKNK*
Ga0151516_1006169	F025282	AGGAG	MIYLAAVCHDIKSNTLEATWLEETETELKRVKCRNYSAEQKDEFLADCGADGEKYTTLAGW*