Scaffold Ga0151516_10056

Overview

Basic Information

• Taxon OID: 3300011116
• Scaffold ID: Ga0151516_10056
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Nov
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 58158
• Total Scaffold Genes: 99
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 77 (77.78%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 10 (83.33%)
• Associated Families: 12

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006261	Metagenome / Metatranscriptome	377	Y
F008607	Metagenome	330	Y
F024770	Metagenome / Metatranscriptome	204	Y
F036203	Metagenome	170	Y
F042324	Metagenome / Metatranscriptome	158	Y
F043922	Metagenome	155	Y
F053995	Metagenome / Metatranscriptome	140	N
F054812	Metagenome / Metatranscriptome	139	Y
F056549	Metagenome	137	Y
F058789	Metagenome / Metatranscriptome	134	N
F072277	Metagenome	121	Y
F105048	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151516_1005610	F056549	GGAG	VAEPYVPIADYTTYNNLLIELEVTTDSAETNADALDLAVDNALVHKQTAENAVASKFDLFFLVGA*
Ga0151516_1005620	F008607	AGGA	MDAIYPKVAEFMTDSVVFTPKASVDKYNKPTFGASNTNVTVTGRLIYDTVKSKDVQGVEVVDIGRFITYGPATSITVGHRMVVGADTFTINAVDNIADENGAHHTVIRFGR*
Ga0151516_1005623	F036203	GAG	MAETQQRMSSSDAGNATGSSSKAQPARGVSDAPAVNLKINQVDLFKDLDSLVGRGRQQEGCSIGKMVKQLDEPLRNKLNEIFCNSTVDSSQLAQVMIAYGLAVSSSDVLRRHRRRLMGKEGCKCPIDNLVVPLK*
Ga0151516_1005634	F006261	AGG	MATISSAYTTSEPILIDNPAYWSFTAPESPTIKVNNIIVEQPLNQNIVESYGVFKPLGASKSVVISQSIYGVDGTYQITVQGETAWDALYPVLTYQGTLHVHDPLGRQKYVRFVDRSWTESGNINNLIRVVKVTYYEVDAP*
Ga0151516_100566	F053995	AGGAG	MALVNRLSKGEVAVGALQVGDNDTVYGIEFGTVSIDPASINATTRGGTTFTLTGAATTDIIIVNPPSDLNDDLIYCGAAVTAADTVTVYLYNPTAGSINQAAATFSYCWIDTTA*
Ga0151516_1005666	F054812	GGAG	MNEQEVNKKFDDLVQPKIIQQVIKQKREPAKFPELRYLWGIALLGSFVLIVISAVVTTVLEAL*
Ga0151516_1005677	F072277	AGGAGG	MKKCVACGAFMQEFEVFEKGICVKCYAEEFEKEFQSALKVARLK*
Ga0151516_100568	F024770	AGGAG	MAVSHQRVSVGTTATQLTSDADGRDGQTISIQVPSAGATVYLGGAGVTTTSYGYELLGGTSFSVELQQGEKVFGVVASSTQTVNVFRQGA*
Ga0151516_1005684	F105048	GGA	MRLLSRLTLKQPLRVSEGSLRAIRRAQLEKALAEEADKRRARKKARMFSLISKPQ*
Ga0151516_1005689	F058789	N/A	MGLPEFVNDAPCRSADPWLFDQHQIDLAQPALSYCSRCKFWKECDSLVQPQTNHYDGIVAGKVWRNGRILAKLDAYSPNRLVVGEESIEENNYAVEIRGSELLGNRDELLLPE*
Ga0151516_1005691	F042324	AGGGGG	MAIWVDFFTEKLQGSKVVVDSNGKPYISKEIAPKEYVEIELNISQQFLPYHIYFRRYDANGNELENRLFAQVGDRDLALKSFNDLTSKRINSFELVLDGE*
Ga0151516_1005696	F043922	N/A	MNRRETQKAIQEAYAKWSEKVEFTSETGASDKDESEIMAQISTILQGNKPQSE*