Basic Information | |
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Taxon OID | 3300011115 Open in IMG/M |
Scaffold ID | Ga0151514_11091 Open in IMG/M |
Source Dataset Name | Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016May |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Chunlab, Inc |
Sequencing Status | Finished |
Scaffold Components | |
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Scaffold Length (bps) | 10448 |
Total Scaffold Genes | 13 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (23.08%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea |
Source Dataset Sampling Location | ||||||||
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Location Name | Gangwon-do, South Korea | |||||||
Coordinates | Lat. (o) | 37.947421 | Long. (o) | 127.818872 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F028730 | Metagenome | 190 | Y |
F031849 | Metagenome | 181 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0151514_110911 | F028730 | N/A | WFPEEGMAMGIITPSMMDNAIGTVRFIGPVVPLAAFDLALEGNDQVMCSYGRFGLSDGWTPQSGKFIEFKKPRVVLQLDSQIPFPKKATLEQTQAIIKFAGVMKISPNWLCVDRTGNGAGIHDSLCSLFGSEVMGVNYSWAASDTHILGDDSQKANELYNGVVTELIFGLGKYLEFGFLKISPSFRNEELTRQATSRRYKQQGMGLVRVESKGDYCKRTRSKSPDELDSLSMLVYLMRQRGGAVATMTEAKPEPRNNRREIQSLVDSMEFVDMSD* |
Ga0151514_110917 | F031849 | N/A | MANLKPLDPKITDAFSNKSARLGDGSDRPRILDLNVIDPDIGNLDTINKDTLEVRRTFKDAEQAHSAYRRLKQQNVERNRKNTMIQKKLNLEPPYQNKKLESMGQNWRSNRPTGFLSSMVSRIQPPFKQVIEQAPTLTYAKYPIESIDAENKTKVFREEITKCIRGWKGFDDVLAQVVHENTTFGYCALCWDDIRDWKPEFLRQDYTFFSIETPQQVEQTPIWARKRRYQIAELLPVLEDPRFSAAAGWHINNLVESINNATPAGRTLDSDDDARRLEDWMREGSYGASYENDAKYVELGEILVREPHGKISRFLFDDKSGKEICTQIDRYNRMSETLALFSVEIGSGALMSSRGAGRDLYNTHVAVEKARNLVVDNTYLKGLLLLKKGPTAKVGVPPLTVHHPVAFVSEGYEVIPQNLPADTDDFLKLDQFVSGLAEVQVGTFLPSPPVNSGAAKTASEVNRVAAIENQLREGILTRFSRQFSQAVERMQRGICHPEHIKAAADLKAKLDIARQYQPSAVWAKMDVVEAFGRSMMELPPFLIPFDIANHLDEDAVSACLNMLERNVPPSDILLMAFSPASQLLQDTTPQDNLILDSLIQRYMGNPNVNQDELMKLDWSRKLGESLANQVILPKDQVEAIAIEATRQQIIELQSIVSGQEIPVSPRDNDIVHLDTMTQKLMPVIASAPAGSLPQEAIAPLTQALTHYNNHIQAAEAKGVAKDVLQKYKQAMKEAMNHITAGQAMPMPQDMAPAASPSSAGVPRVPVAQGKLLQTQYEATTPNQSGTIESAANPPRPATAN* |
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