NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0151514_11064

Scaffold Ga0151514_11064


Overview

Basic Information
Taxon OID3300011115 Open in IMG/M
Scaffold IDGa0151514_11064 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016May
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)10613
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (8.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameGangwon-do, South Korea
CoordinatesLat. (o)37.947421Long. (o)127.818872Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032099Metagenome / Metatranscriptome181Y

Sequences

Protein IDFamilyRBSSequence
Ga0151514_110649F032099N/AMDKIRGGARPNAGRKSKVEEQKVNNVFLKALGELYSKETEEDTKIAFVKDTLMQSQRGQLFIAEHIFGKPKEIIEATHNVNDFNIKDIFKVGNSNKSEI*

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