Scaffold Ga0151514

Basic Information
Taxon OID	3300011115 Open in IMG/M
Scaffold ID	Ga0151514_11039 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016May
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011115 Open in IMG/M

Scaffold ID

Ga0151514_11039 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016May

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	10746
Total Scaffold Genes	26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (53.85%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (57.14%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

10746

Total Scaffold Genes

26 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

14 (53.85%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (57.14%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.947421	Long. (^o)	127.818872	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.947421

Long. (^o)

127.818872

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012434	Metagenome	280	Y
F016936	Metagenome / Metatranscriptome	243	Y
F017799	Metagenome	238	N
F024061	Metagenome / Metatranscriptome	207	N
F029363	Metagenome / Metatranscriptome	188	Y
F042326	Metagenome	158	Y
F059946	Metagenome / Metatranscriptome	133	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151514_1103911	F016936	N/A	MTLDLIHAELIRIREALEARPYAAGAPPAKPATPRSEEVPMPTEIIADAGNVQVHFGKNKGVTLSSLSERSVAWYAQEPEPRIGNNGKPFPPRPEDVLLRNAARTLIHQKRGTILSAAAPQPNAPVASIDDGDVSF*
Ga0151514_1103914	F024061	AGGA	MNAGEIKNTAVINNATEQFRSLLETHFIAIARAAEESFVDDEMQTEPKAKATFAVEWDALSLSPKVVVKIGWSVRYKDESEAMVDPLQSKLGLVEEAK*
Ga0151514_1103917	F042326	GGA	MISDALTVAAIFASGGLIGYIIGSLRGHKRGRDEQWVESFLAGEKREKARREKDGRFKAKTKT*
Ga0151514_1103919	F059946	N/A	MNKRKSDEAKRIQCDAMLAQFMPVKTIAMALRMSRGTVSERAKRAGMTRHYITADEAKLLFRNRIGGGAK*
Ga0151514_1103925	F017799	GGA	MEKNTANDQRELEALRFSSRASRAITTLEMQRKSIGREYGERIKKIKALILILQQRESLGQMSIEGIDAVEITPELRKLIYNPVGDLL*
Ga0151514_110397	F012434	N/A	MPADMSPTAALTRALILAITAPDQARADRAIALAESIGAGCTPRQVATAKRNAARLAK*
Ga0151514_110399	F029363	AGGA	MNDDNYDTENEMTWAAKDLRTITSNQTEVTISRRIIISPINSGAKWDYLITFGDLMNRGKWRWECAQADTLEAAMDITRAQITAQGDEKARELLQLQDAAAKLGLKLVESTQ*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0151514_11039

Overview

Ecosystem & Geography

Associated Families

Sequences