Basic Information | |
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Taxon OID | 3300011115 Open in IMG/M |
Scaffold ID | Ga0151514_10886 Open in IMG/M |
Source Dataset Name | Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016May |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Chunlab, Inc |
Sequencing Status | Finished |
Scaffold Components | |
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Scaffold Length (bps) | 12086 |
Total Scaffold Genes | 18 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 17 (94.44%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea |
Source Dataset Sampling Location | ||||||||
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Location Name | Gangwon-do, South Korea | |||||||
Coordinates | Lat. (o) | 37.947421 | Long. (o) | 127.818872 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F001599 | Metagenome / Metatranscriptome | 665 | Y |
F005587 | Metagenome / Metatranscriptome | 395 | Y |
F105020 | Metagenome / Metatranscriptome | 100 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0151514_1088611 | F001599 | AGTAGG | MKQETVSIAWCDNGNVDGKFMQGVVDVMLKSGVKFETSLRSQGNQIARQREKVISYWYENNKSDWLLWVDSDVVISVDKFKLLWDNKDAEKHPIVTGVYFTTDTPEDPLMIPMPTVYEFAEADGTIGIQRMHPLPENKFIKVGAAGMGFVLMHRNVVTKIIEAVPGVPLFTEVGVNKSFMGEDIYFFALCDKAEVPVWCHTGATVPHMKRFSFDEHYYKAFFGGLKEDKKSNLILPKQGLITPKKG* |
Ga0151514_1088617 | F005587 | GGA | MSDLVKAIRLLKPTSEFSYQNEDYSTIKWDVLEGDAPTQAEIDAAIEQVKADKIAAETKAVADRAALLARLGITEEEAALLLGGTN* |
Ga0151514_108866 | F105020 | AGTAGG | MEHQHISKVLEWGFTAEHDFQAILWGCVLCDETADKPFEYEEISIDHTACDEDCFGCKAKGLQLNTGDAKRDIPDKKWTAELNDYKEARRQGMQPSGTTKAHVEAAYTASETLGKAYDADTMPKAKDITKESVAVMKEIGQI* |
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