Scaffold Ga0151514_10804

Overview

Basic Information

• Taxon OID: 3300011115
• Scaffold ID: Ga0151514_10804
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016May
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 12913
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (82.35%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001599	Metagenome / Metatranscriptome	665	Y
F060868	Metagenome / Metatranscriptome	132	Y
F105020	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151514_1080413	F001599	AGGTGG	MQETISVAWCDNGMVDGKFTQGMVDILLHSGLKFETSIRSQGNQIGRQRETIVKYWYENNKSDWLLWLDSDVVVSPEKFKLLWDNRDAETKPLLTGVYFTTDTPEEPLMIPMPTVFEFVEEEGAVGIKRLHPMPENKLIQVGAAGMGFVLMHRSVITKIIEAVPDAPIFTEVGVGKQFMGEDIYFFALCDKAEVPVWCHTGATVPHMKRFSFDEHYYKAFFGGAKEEKKSNLVLPKRYQKG*
Ga0151514_108047	F060868	AGGAG	MATYKFTTPYVLEGPSGGHRLFYFANLRKGITIVKSGSTYSQVRYIPDDTQDDYDVVYRGGYTHEGISEAIKAELIAGGVGVTEANFTAE*
Ga0151514_108048	F105020	N/A	VLDWGFDENHDFIAKTWGCVLCDAVSEVPFKDEDDIAIDHTMCDEDCFGCKARGLQLNTGDAGRDIPDKKWNSELSAYREARRQGIQPSGTNMHHIEAAHKASENLGQAYDADTMPKAKDITPKAVEVMKEIGQI*